Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1101 196 6e-45 seq446 196 6e-45 seq3828 149 7e-31 >seq1101 Length=81374 Score = 196 bits (216), Expect = 6e-45 Identities = 416/611 (68%), Gaps = 15/611 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||| | ||| || || || ||| | ||||| || | |||||||| ||||| || | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | |||| || ||||| || ||||| || || |||||||| ||||| ||| || ||||| Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 7467 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-----ACCGG 24300 || |||||||| || || || | ||||| || | || | ||| | || || Sbjct 7466 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACT 7407 Query 24301 CGCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 24359 ||| | ||| |||||| | ||||||| ||| |||||||| ||||| || || || Sbjct 7406 CGCGGGTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTA 7350 Query 24360 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 24419 || || ||| | |||| || || || | || || | |||||||||||| | Sbjct 7349 TCAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGC 7290 Query 24420 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 24479 || ||| | ||||| ||||| || ||||| || || ||||| |||||||| || | | Sbjct 7289 AGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGA 7230 Query 24480 GCCTC-GGTAATCTGTACTTCTATAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTC 24537 || || |||| | || ||||| | | ||||| | || | ||||| ||||| || | Sbjct 7229 GCTTCAGGTACT-TGCACTTCGTTGCTAAAATTCAT-GGCGAGGTTTTCGTTCACAATGC 7172 Query 24538 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 24597 | || |||||||||||||| || | ||||| || | |||| ||| | || | Sbjct 7171 CATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGA 7112 Query 24598 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 |||| | ||| || |||| ||| | | || | || || ||||||| || || | Sbjct 7111 GTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAG 7052 Query 24658 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 |||| ||||| || ||||| | ||| | ||| | | ||||| ||||||| || || | Sbjct 7051 CCTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAAC 6992 Query 24718 TATTTGGATTT 24728 ||| || ||| Sbjct 6991 GATTGGGGTTT 6981 >seq446 Length=286769 Score = 196 bits (216), Expect = 6e-45 Identities = 416/611 (68%), Gaps = 15/611 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||| | ||| || || || ||| | ||||| || | |||||||| ||||| || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | |||| || ||||| || ||||| || || |||||||| ||||| ||| || ||||| Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 150897 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-----ACCGG 24300 || |||||||| || || || | ||||| || | || | ||| | || || Sbjct 150896 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACT 150837 Query 24301 CGCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 24359 ||| | ||| |||||| | ||||||| ||| |||||||| ||||| || || || Sbjct 150836 CGCGGGTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTA 150780 Query 24360 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 24419 || || ||| | |||| || || || | || || | |||||||||||| | Sbjct 150779 TCAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGC 150720 Query 24420 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 24479 || ||| | ||||| ||||| || ||||| || || ||||| |||||||| || | | Sbjct 150719 AGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGA 150660 Query 24480 GCCTC-GGTAATCTGTACTTCTATAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTC 24537 || || |||| | || ||||| | | ||||| | || | ||||| ||||| || | Sbjct 150659 GCTTCAGGTACT-TGCACTTCRTTGCTAAAATTCAT-GGCGAGGTTTTCGTTCACAATGC 150602 Query 24538 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 24597 | || |||||||||||||| || | ||||| || | |||| ||| | || | Sbjct 150601 CATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGA 150542 Query 24598 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 |||| | ||| || |||| ||| | | || | || || ||||||| || || | Sbjct 150541 GTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAG 150482 Query 24658 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 |||| ||||| || ||||| | ||| | ||| | | ||||| ||||||| || || | Sbjct 150481 CCTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAAC 150422 Query 24718 TATTTGGATTT 24728 ||| || ||| Sbjct 150421 GATTGGGGTTT 150411 >seq3828 Length=141882 Score = 149 bits (164), Expect = 7e-31 Identities = 674/1059 (64%), Gaps = 14/1059 (1%) Strand=Plus/Plus Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506 ||||| ||||| || || || ||||| || || || | || | ||| ||||| | Sbjct 94612 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGTTCGCTTTCAAACGCG 94671 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 ||||| | ||||| || || || || | || |||||||||||||| | ||| | || Sbjct 94672 TAATTCATAAGAATGAATGCATCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGG 94731 Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 | | ||||||| ||| ||| |||| || || || || || | || |||| || || Sbjct 94732 CGCATATTAGACGTTTGAGCCTCTGCAACCGGGTAGTAGTTGACGTCGATAACCTTGTTA 94791 Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCT 53686 || || | | | || || |||||| | ||| || | ||||| || | | Sbjct 94792 AGATTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCAAAGGCACCGTTT 94851 Query 53687 ATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 53746 ||||| | | || | ||| |||| || || || || || ||||| | | Sbjct 94852 TCAACAAATTTTGGTAGAGCCACAGACGCCAAGTTGCACACAGCCACTTCATTCGGCGAC 94911 Query 53747 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 53806 | ||| | || | |||| ||| | ||||| | ||| || || | ||| || || Sbjct 94912 GTATACTCCATCACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 94971 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 || ||| |||| ||| |||||| |||| || || || || || |||||||| Sbjct 94972 TTGGACTTACGGTTAACCGCGTCCTTAAAAAGCATAAACGGTACGCCCGTCTCAATCTGC 95031 Query 53867 GATTCTATAATCGCTTT-CCAGACGACACGAGCCTTTATTATAGATTTGT-ATCTCTT-- 53922 | |||| || ||| ||| | | || || ||| | |||| | | | | Sbjct 95032 GCATCTAAGAT-GCTAAACCATAGCTGCTGTGCATTAATTGT---TTTGCGAGCACGTCC 95087 Query 53923 TTCTCTTTCGTATAGTGTATACAATCGT-TCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 ||| | |||||| | | | || || || |||||||||||||| | || | Sbjct 95088 TTCCCGTTCGTACTTTTCAAA-AAGCGCCTCGAACTCGTCTCCCCAGCACTCGTAAAGAG 95146 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 |||| ||| | ||||| | || ||||| || | | | ||| |||||||||| Sbjct 95147 CAGGTGCTTCGTTTGGACAAAATAAACTCCACTTGCCATTGGCTTCCACCCGTTTCATAA 95206 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 | | |||||||| |||||| || |||| || | | || ||| ||| || || Sbjct 95207 ACAAATCAGGAACCCAAAGGGCGTAGAATAAGTCACGCGCTCGGTGTAGCTCATTACCGT 95266 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 ||||| ||| || || ||| | | | || | ||||||||| |||||||||| | Sbjct 95267 GGTTCTTACGAAGGTCCAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATACAG 95326 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | | || ||||| ||| || || || | ||||| || |||| ||| | | Sbjct 95327 CAAAAGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAACA 95386 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281 | | |||||| ||||| || || || || | ||||| || || ||||| || | Sbjct 95387 CACGCAACATAGGAATGATCCCGTTAGAGGACCCATTAGTGCCACGAATATAACTGTTAG 95446 Query 54282 TGGCACGAATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 |||| || || | | | | |||| || || || || ||| || || || |||| Sbjct 95447 TGGCTCGTATGTTGTGCATACTGAT--GCCAATTCCACCCGCCCACTTGGAAATGCATGC 95504 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| |||| || || ||||| || || || || ||||||| ||| |||| ||| Sbjct 95505 ACATTGTTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAAA 95564 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 || |||| |||| ||||| |||||| |||||||| || || || | || ||||| Sbjct 95565 RCACGAGGACAGTTGGGGACGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGCGT 95624 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498 ||| | || | ||| | | | ||||||||| | ||| Sbjct 95625 AAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGC 95663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593691802597200