Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1101 242 4e-59 seq446 242 4e-59 >seq1101 Length=81374 Score = 242 bits (268), Expect = 4e-59 Identities = 427/617 (69%), Gaps = 4/617 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || || |||||| || |||||| |||| ||||| || | ||| Sbjct 6964 GAGCCGTTCCTCGTCGTAAACCCCAATCGTTTCGTGCTTTTTCCCATTCAGGAGAACGAC 7023 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||| ||||||||||| ||||||||||| | ||||||| | |||||| Sbjct 7024 GTGTGGCAAATGTACAAGAAGGCCGAGGCTTCGTTCTGGACAGCCGAGGAGCTCGACCTG 7083 Query 116696 -TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||| | | | || |||||||| | | ||||| || ||||||||| | ||||| Sbjct 7084 GTCCACGATCTCAAG-GACTGGGACAAACTCACGGACAATGAACGCCATTTCGTGAAGCA 7142 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||| |||||||| || |||||||| ||||| || ||||| || || | | | ||| Sbjct 7143 TGTGCTTGCCTTTTTTGCAGCCAGCGATGGCATTGTGAACGAAAACCTCGCCATGAATTT 7202 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || ||||| || | || || || ||||||||||| |||||||| || || || Sbjct 7203 TAGCAACGAAGTGCAAGTACCTGAAGCTCGCTGCTTCTACGGGTTTCAGATTGCGATTGA 7262 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 ||| | |||||||| | |||||| || || || || || | | | | || Sbjct 7263 GAATATTCACTCGGAGGTCTATTCGCTGCTTATTGATACATATATCAAGAATGCTGGAGA 7322 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| || | || || ||||| || ||||| || || |||||| |||| ||| | || Sbjct 7323 GAAGGACCATCTGCTGCGTGCCATTGATACGATACCATGTGTCAAAAAGAAAGCCAATTG 7382 Query 116995 GGCGCTGCGCTGG-ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 ||| || ||| | || || ||| | | | | || ||||| || |||| || | Sbjct 7383 GGCACTCAAGTGGTGTGACCCGC-GAGTGTCATCGTACGCAGAGCGTCTATTGGCGTTTG 7441 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | | || |||||| | ||||| || || ||| | |||| |||||||| ||||||| Sbjct 7442 CCTCGGTGGAGGGCATTTTCTTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAGAAAC 7501 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 | || || ||||| || || | ||| |||||||| || | || ||||| ||| Sbjct 7502 GTGGTCTTATGCCTGGTCTCAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGC 7561 Query 117174 ATTGCGACTTTGCCTGT 117190 | |||||||| ||| Sbjct 7562 ACACGGACTTTGCTTGT 7578 >seq446 Length=286769 Score = 242 bits (268), Expect = 4e-59 Identities = 427/617 (69%), Gaps = 4/617 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || || |||||| || |||||| |||| ||||| || | ||| Sbjct 150394 GAGCCGTTCCTCGTCGTAAACCCCAATCGTTTCGTGCTTTTTCCCATTCAGGAGAACGAC 150453 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||| ||||||||||| ||||||||||| | ||||||| | |||||| Sbjct 150454 GTGTGGCAAATGTACAAGAAGGCCGAGGCTTCGTTCTGGACAGCCGAGGAGCTCGACCTG 150513 Query 116696 -TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||| | | | || |||||||| | | ||||| || ||||||||| | ||||| Sbjct 150514 GTCCACGATCTCAAG-GACTGGGACAAACTCACGGACAATGAACGCCATTTCGTGAAGCA 150572 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||| |||||||| || |||||||| ||||| || ||||| || || | | | ||| Sbjct 150573 TGTGCTTGCCTTTTTTGCAGCCAGCGATGGCATTGTGAACGAAAACCTCGCCATGAATTT 150632 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || ||||| || | || || || ||||||||||| |||||||| || || || Sbjct 150633 TAGCAAYGAAGTGCAAGTACCTGAAGCTCGCTGCTTCTACGGGTTTCAGATTGCGATTGA 150692 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 ||| | |||||||| | |||||| || || || || || | | | | || Sbjct 150693 GAATATTCACTCGGAGGTCTATTCGCTGCTTATTGATACATATATCAAGAATGCTGGAGA 150752 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| || | || || ||||| || ||||| || || |||||| |||| ||| | || Sbjct 150753 GAAGGACCATCTGCTGCGTGCCATTGATACGATACCATGTGTCAAAAAGAAAGCCAATTG 150812 Query 116995 GGCGCTGCGCTGG-ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 ||| || ||| | || || ||| | | | | || ||||| || |||| || | Sbjct 150813 GGCACTCAAGTGGTGTGACCCGC-GAGTGTCATCGTACGCAGAGCGTCTATTGGCGTTTG 150871 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | | || |||||| | ||||| || || ||| | |||| |||||||| ||||||| Sbjct 150872 CCTCGGTGGAGGGCATTTTCTTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAGAAAC 150931 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 | || || ||||| || || | ||| |||||||| || | || ||||| ||| Sbjct 150932 GTGGTCTTATGCCTGGTCTCAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGC 150991 Query 117174 ATTGCGACTTTGCCTGT 117190 | |||||||| ||| Sbjct 150992 ACACGGACTTTGCTTGT 151008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515193342436400