Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq446 152 5e-32 seq1101 150 2e-31 >seq446 Length=286769 Score = 152 bits (168), Expect = 5e-32 Identities = 378/568 (67%), Gaps = 6/568 (1%) Strand=Plus/Minus Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 |||| | ||||||||| || |||| || || || | ||| |||| ||||||||| | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 | | ||||| ||||| || || ||||| || | |||||| || | | || || || | Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 150896 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttt 16406 | ||||| || || || || | |||||| || | | ||||| |||||| | | Sbjct 150895 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 150836 Query 16407 tactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTA 16466 || ||| || |||||||| ||||| | ||| ||||| || | || | Sbjct 150835 GCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAA 150776 Query 16467 TTGCATTAAATAAATAAtttttttCTTT-GCTATCTAAAATATAAGTATCTATTAGTAAA 16525 | ||| | | || | || ||| || ||| | |||| ||||| || || | Sbjct 150775 TGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGA-TATATGTATCAATAAGCAGC 150717 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||| | || || ||||||||||| || || |||||||| || || ||||| | |||| Sbjct 150716 GAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCT 150657 Query 16586 TCGGATATTTGTACTTCAGAG-TAAAACCTTTCTG-CTAAGTTTTCGTTAACTATTCCAT 16643 || | || ||| ||||| | ||||| || || | | ||||||||| || || |||| Sbjct 150656 TCAGGTACTTGCACTTCRTTGCTAAAA--TTCATGGCGAGGTTTTCGTTCACAATGCCAT 150599 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTT 16703 |||| ||||||||||| ||||| | || || | |||| ||| || || | |||| Sbjct 150598 CGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTT 150539 Query 16704 TTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAA 16763 | |||||| | ||| | | |||| ||| || | ||||| || ||||| Sbjct 150538 TGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCT 150479 Query 16764 CAGCCTTTTTATACATTTTCCATATGTC 16791 | ||||| || ||||||| ||| | ||| Sbjct 150478 CGGCCTTCTTGTACATTTGCCACACGTC 150451 >seq1101 Length=81374 Score = 150 bits (166), Expect = 2e-31 Identities = 378/568 (67%), Gaps = 6/568 (1%) Strand=Plus/Minus Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 |||| | ||||||||| || |||| || || || | ||| |||| ||||||||| | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 | | ||||| ||||| || || ||||| || | |||||| || | | || || || | Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 7466 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttt 16406 | ||||| || || || || | |||||| || | | ||||| |||||| | | Sbjct 7465 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 7406 Query 16407 tactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTA 16466 || ||| || |||||||| ||||| | ||| ||||| || | || | Sbjct 7405 GCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAA 7346 Query 16467 TTGCATTAAATAAATAAtttttttCTTT-GCTATCTAAAATATAAGTATCTATTAGTAAA 16525 | ||| | | || | || ||| || ||| | |||| ||||| || || | Sbjct 7345 TGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGA-TATATGTATCAATAAGCAGC 7287 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||| | || || ||||||||||| || || |||||||| || || ||||| | |||| Sbjct 7286 GAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCT 7227 Query 16586 TCGGATATTTGTACTTCAGAG-TAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCAT 16643 || | || ||| ||||| | ||||| || | || | ||||||||| || || |||| Sbjct 7226 TCAGGTACTTGCACTTCGTTGCTAAAA--TTCATGGCGAGGTTTTCGTTCACAATGCCAT 7169 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTT 16703 |||| ||||||||||| ||||| | || || | |||| ||| || || | |||| Sbjct 7168 CGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTT 7109 Query 16704 TTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAA 16763 | |||||| | ||| | | |||| ||| || | ||||| || ||||| Sbjct 7108 TGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCT 7049 Query 16764 CAGCCTTTTTATACATTTTCCATATGTC 16791 | ||||| || ||||||| ||| | ||| Sbjct 7048 CGGCCTTCTTGTACATTTGCCACACGTC 7021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462488787679000