Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1113 140 3e-28 >seq1113 Length=254142 Score = 140 bits (154), Expect = 3e-28 Identities = 424/652 (65%), Gaps = 5/652 (1%) Strand=Plus/Minus Query 19977 AGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAG 20036 ||| ||||| || || |||||| | ||||| ||||| ||| ||| | |||| Sbjct 13632 AGACCGAACAGGTACCGGAACGCTGTCTGTGTTTGGGGCGCAGATGAGATTTCGTCTGAG 13573 Query 20037 A---AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGA 20093 | |||| ||||| || | || ||||| ||| |||||| || || | || || Sbjct 13572 AGAGAATGTCTTTCCGTTGCTGACGACGAAGAAGGTGTTTTGGCGTGGTGTGGCCGAGGA 13513 Query 20094 GTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGA-GTTA 20152 ||| | |||||||||| || || ||| | | |||| || ||||| | ||| Sbjct 13512 GTTGCTGTGGTTTATTAGTGGTGACACGAATGCGCACACGCTTC-AGCAAAAGAATGTTC 13454 Query 20153 AGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTC 20212 | |||||| || |||| || | | || |||| | ||| | | || Sbjct 13453 ACATTTGGGACGGCAATGGGTCGCGCGAGTACTTGGACAGTAGAGGACTGCAGTCACGCG 13394 Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 | | ||| ||| | || || || ||||| ||||||||| | |||||||| || | || Sbjct 13393 AGGTGGGAGATCTTGGACCGGTTTATGGTTTTCAATGGCGCCATTTTGGTGCCAAGTACA 13334 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 || ||| || | | ||| || ||||| || || || | | || || || Sbjct 13333 CGGATATGCACGCCGACTATAGCGGCCAAGGCGTGGACCAGCTTGCCGAGGTGATCCATA 13274 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 | ||||| || || ||| | ||||| | | | || ||||| | ||| Sbjct 13273 AGCTCCGCACGAATCCCAATGACCGCCGAATTGTGCTGTCAGCTTGGAATCCGGCTGATC 13214 Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452 || | |||||| |||||||| || || ||| | || || |||||||| || || ||| Sbjct 13213 TGAATGAAATGGCATTGCCTCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGATGATG 13154 Query 20453 AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATA 20512 || ||||||| || ||||| ||||| || || ||||| ||||| || || || || |||| Sbjct 13153 AACTGTCGTGCCAGATGTACCAACGCTCGGCCGATATTGGACTAGGCGTGCCGTTTAATA 13094 Query 20513 TTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTG 20572 |||| || |||||| |||| ||| | || | || || || || | ||| | || | Sbjct 13093 TTGCCAGCTATGCGTTGCTGACGCGTTTGGTCGCGCAAGTGGTAGGACTGAAAGCTGGCG 13034 Query 20573 ACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624 | || |||| ||| || ||||||||||| || || ||||| |||| || Sbjct 13033 AGTTCATCCATGTCATCGGTGACGCGCATATCTATCTGAATCACGTAGAGCC 12982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399164466804175