Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3828 138 1e-27 seq3385 138 1e-27 seq1101 132 4e-26 seq446 122 8e-23 >seq3828 Length=141882 Score = 138 bits (152), Expect = 1e-27 Identities = 1194/1907 (63%), Gaps = 73/1907 (4%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| ||||||| || ||| ||| | || ||||| || Sbjct 93957 CTTGTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGCCCGCGCATGTAGTACATACC 94016 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || ||| ||||||| || ||||| || || || || | ||| | |||| Sbjct 94017 CGTCTTTAGCCCCTTCTTCCAAGCATAAAAGTGCATGGATGTGAGTTTACTGATCGTCGG 94076 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || | |||||||||||| |||| | || || || || || | Sbjct 94077 GTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAGATATAAGCACCACGGTCAGCCGA 94136 Query 22285 CATATTTATCA---ATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGAT 22341 || || || || || | || | |||||||| || ||||||||| | ||| Sbjct 94137 CAGATCTAACACGGATTTCTGCTTG---ATTTCCCACACTGTCTTGTACTTCTCYTTGAC 94193 Query 22342 CTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 | ||| || || | | | || || || || | | || | ||| | || Sbjct 94194 ATGGTCCGGAATGCTTTTCACCTTTTGCACAGARCCATGGTCGTTCAGTATC---TGGTT 94250 Query 22402 AATCGTA--TCGT---TCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456 | || | ||| |||| | ||| | || ||| ||||| | ||| | |||| Sbjct 94251 A--CGGACCTCGGGCGTCCAGATACCCAGATCGATCAGCTCTTTCATCAGGTACTTGTTC 94308 Query 22457 ACCA-CTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTT 22514 || | | |||| ||| || | |||| || || || | ||| ||||| || ||| | || | Sbjct 94309 ACGATCGTGAA-CTCACCAG-CAAGCACACGTCGATTGTACATGTTCGACGTGTATGGCT 94366 Query 22515 CGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACA 22574 ||| || || ||||| || || ||||| || |||||||| || ||||| || |||| | Sbjct 94367 CGATGGACTCGTTGTTACCAAGGATCTGGGCAGTCGAAGCAGTAGGCATGGGAGCCACTA 94426 Query 22575 GTAGCGAGTTTCTCAAGCCGTGCTT--TGAAATTTTACTCTTGAGCATCGACC-AGTCCC 22631 | | ||||| | | |||||||| | | ||| | | || || | ||||| |||||| Sbjct 94427 GCAAAGAGTTGCGGATACCGTGCTTAATCACATTCT--TTTTCAG-AGCGACCCAGTCCC 94483 Query 22632 ACAGATC---GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCG 22688 | ||| | |||||| | ||| ||||||| || | || || | || || | Sbjct 94484 AAAGACCAGAGGACGGAATGACAC---CCCACATGTCAAACTGGAAGATACCCTTGCTAG 94540 Query 22689 CCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCT 22748 ||||| ||| | | ||||||||||| || | | ||||| || | | || Sbjct 94541 CCGGGGAGCCCTGAAATGTTTCGTACGGGCCCAGTTCCTTGGCAATCTCCATGGATGTCT 94600 Query 22749 CCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGC 22808 ||| || | ||||| || ||||| || || |||||||||| ||| || ||| Sbjct 94601 CCATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGTTCGC 94660 Query 22809 TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGA 22868 |||| ||| | ||| | | ||| || || |||| ||||||||| || ||||| | Sbjct 94661 TTTCAAACGCGTAATTCATAAGAATGAATGCATCGGCCAGACCCTGAACACCAATACCCA 94720 Query 22869 TCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGA 22928 || |||| || ||| ||| || ||||| | | || || | || |||| Sbjct 94721 CAGGGCGGTGGCGCATATTAGACGTTTGAGCCTCTGCAACCGGGTAGTAGTTGACGTCGA 94780 Query 22929 TTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988 | |||| | || | ||| || | ||||| | | |||| Sbjct 94781 TAACCTTGTTAAGATTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTC-- 94838 Query 22989 AAACGCCCGATTGTACAACAAACTT--GTTGACGGCGATCGAGGCAAGATTGCATACGGC 23046 ||| || | || | ||||||| || || || || | || || | ||||| || || Sbjct 94839 AAAGGCACCGTTTT-CAACAAATTTTGGTAGA--GCCACAGACGCCAAGTTGCACACAGC 94895 Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||| || | ||||| ||||| | | || || | || || | ||||| Sbjct 94896 CACTTCATTCGGCGACGTATACTCCATCACCTCACAGCACAAGTTACTGGATCGGATCGT 94955 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||| | ||| ||||||| || || || || ||||| | ||||| |||| Sbjct 94956 GCCAAGATTCTGCTGGTTGGACTTACGGTTAACCGCGTCCTTAAAAAGCATAAACGGTAC 95015 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGT--CTGAGCGTGAACACGT 23224 ||||||||| | ||||| || | ||| ||| | ||||| ||| || | || | Sbjct 95016 GCCCGTCTCAATCTGCGCATCTAAGAT-GCTAAAC-CATAGCTGCTGTGCATTAATTGTT 95073 Query 23225 C-GCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA 23283 || | || | ||||| |||||||||| | | ||| || || ||| | || | Sbjct 95074 TTGCGAGCACGT-CCTTCCCGTTCGTACTTTTCAAAAAGCGCCTCGAACTCGTCTCCCCA 95132 Query 23284 ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT--- 23340 || ||| || | || | || | ||||| | | ||||||| | | |||| Sbjct 95133 GCACTCGTAAAGAGCAGGTGCTTCGTTTGGACAAAATAAACTCCACTT---GCCATTGGC 95189 Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || ||| ||||||| | ||| || | ||| || |||||||| | || || || || Sbjct 95190 TTCCACCCGTTTCATAAACAAATCAGGAACCCAAAGGGCGTAGAATAAGTCACGCGCTCG 95249 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 ||| || ||| |||||| | |||| ||| || |||||||| |||||||| Sbjct 95250 GTGTAGCTCATTACCGTGGTTCTTACGAAGGTCCAGAAACTCAAACACGTCGGCATGCCA 95309 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 |||||| | ||| || ||||| | || | ||| || || || || ||||| || Sbjct 95310 CGGCTCCAAGTATACAGCAAAAGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCG 95369 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| |||| ||| |||| | | ||| || | || ||||| || | || | Sbjct 95370 GGCTGTGTCGTTAAACACACGCAACATAGGAATGATCCCGTTAGAGG----ACCCATTAG 95425 Query 23581 CGCCAC-ACTCGAACCTT---TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGC 23636 ||||| | | ||| | | ||||| | |||||| | || || || || || Sbjct 95426 TGCCACGAATATAACTGTTAGTGGCTCGTATGTTGTGCATACTGATGCCAATTCCACCCG 95485 Query 23637 CCGATTTCGATAT-CATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCC 23695 || | || || || ||| || |||||||||| ||||| || || || || || || Sbjct 95486 CCCACTTGGAAATGCAT-GCACATTGTTTCAATGTGTCATAAATACCTTCAATCGAATCA 95544 Query 23696 TCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAAC 23755 || | | || | || || ||||| |||| ||| | || || | || ||| Sbjct 95545 TCCTGCATAGCTAGTAAAAARCACGAGGACAGTTGGGGACGAGGAGTTCCAGCATTAAAC 95604 Query 23756 AGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCG 23815 | || || | || |||||||| | | ||||| | | |||||| || | || Sbjct 95605 AACGTTGGCGTCGCATGCGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCC 95664 Query 23816 GCATCAAT-GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCT 23874 || | || | |||| ||| ||||| | || |||||||| || | | ||| || | Sbjct 95665 GCTTGGATATTGCTCT-TGTGGATACCTAACGCAACGCGCATAATTAAYTGTTGCGGCCG 95723 Query 23875 CTCGAC--CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC---ATCGTTTTAAAT 23929 ||| || | | | || |||| || |||||| | || | | |||||| || Sbjct 95724 CTCCACGACTTTA--CCATTAACACGAAAAAGATAT---CCTTTCTCGAGCGTTTTRAAC 95778 Query 23930 CCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || ||||| ||||| | |||||| || |||| | || || ||||| Sbjct 95779 CCGAAATAATCATACTCAAAGTCCCGGTCGTRRATAATTGCAGAATT 95825 >seq3385 Length=38424 Score = 138 bits (152), Expect = 1e-27 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| ||||||||| |||||||||| || || || | || || ||| |||| Sbjct 14514 CATGCAGATTTTTGTAAAGACTTTGACAGGCAAGACCATTACTTTGGAGGTGGAATCGTC 14455 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||||| |||||| || || |||| ||| ||||||||||||| | ||||| || || Sbjct 14454 CGACAGCATCGAAAATGTTAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGAGCA 14395 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| ||||| || || |||||||| ||| ||||||| Sbjct 14394 GCAACGTCTGATCTTTGCTGGCAAGCAGCTGGAAGA 14359 >seq1101 Length=81374 Score = 132 bits (146), Expect = 4e-26 Identities = 536/834 (64%), Gaps = 14/834 (2%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 7021 GACGTGTGGCAAATGTACAAGAAGGCCGAGGCTTCGTTCTGGACAGCCGAGGAGCTCGAC 7080 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||| | ||||| | || ||||| |||| || ||| | |||| | || Sbjct 7081 CTGGTCCACGATCTCAAGGACTGGGACAAACTCACGGACAATGAACGCCATTTCGTGAAG 7140 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | || ||||| || || |||||| ||||| ||||| || | | | | | Sbjct 7141 CATGTGCTTGCCTTTTTTGCAGCCAGCGATGGCATTGTGAACGAAAACCTCGCCATGA-A 7199 Query 57747 TTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 |||| ||| ||||||||||| | || || | ||||| ||||| ||||| | || || Sbjct 7200 TTTTAGCAACGAAGTGCAAGTACCTGAAGCTCGCTGCTTCTACGGGTTTCAGATTGCGAT 7259 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 ||| || | || || || | |||||||| || || ||||| || | ||| | | Sbjct 7260 TGAGAATATTCACTCGGAGGTCTATTCGCTGCTTATTGATACATATATCAAGAATGCTGG 7319 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 ||||| ||| | || || || || || || || ||||| || | Sbjct 7320 AGAGAAGGACCATCTGCTGCGTGCCATTGATACGATACCATGTGTCAAAAAGAAAGCCAA 7379 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATCGCGT 57984 ||| || |||| ||| | | ||| | | || ||| ||| ||| | ||| | |||| Sbjct 7380 TTGGGCACTCAAGTGG-TGTGACCCGCGAGTGTCATCGTACGCAGAGCGTCTATTGGCGT 7438 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAG 58043 | ||| | || || || || ||||| || || ||| ||| | || |||||| ||||| Sbjct 7439 TTGCCTCGGTGGAGGGCATTTTCTTCTCCGGATCCTTCTGC-TCCATCTTTTGGCTGAAG 7497 Query 58044 AAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGT 58103 ||||| || || ||||| || || | || |||||| | || || || ||||| Sbjct 7498 AAACGTGGTCTTATGCCTGGTCTCAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGC 7557 Query 58104 CTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGAT 58163 | || || || ||||| || || ||||| || | | || ||||| | || | | Sbjct 7558 ATGCACACGGACTTTGCTTGTCTCATGTATTCCAAACTGGTTAATAAGTTGCCGGAGAGT 7617 Query 58164 CGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCC 58223 || | || ||||| || || || | || || | |||||||| || | Sbjct 7618 CGGGTGCACGAGATTATTCGGGATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTCA 7677 Query 58224 CTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTT 58283 || || || | | | || |||||| | | |||| ||||||||||||| || Sbjct 7678 CTCCCTGTCGAGCTCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTG 7737 Query 58284 GCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTACAACACGAAAAATCC 58339 || ||| | ||| || | ||| | ||| | || ||| || | || || || Sbjct 7738 GCTGAC---CGTTTACT-GTACTCACTGGGTGTTGCCAAGATTTATCACGCCAAGAACCC 7793 Query 58340 GTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || | ||| || |||| ||||| | |||||||| |||||||||||||| Sbjct 7794 ATTCGACTGGATGGATATGATTTCGCTACAAGGCAAGACCAACTTTTTCGAAAA 7847 >seq446 Length=286769 Score = 122 bits (134), Expect = 8e-23 Identities = 375/572 (66%), Gaps = 6/572 (1%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 150451 GACGTGTGGCAAATGTACAAGAAGGCCGAGGCTTCGTTCTGGACAGCCGAGGAGCTCGAC 150510 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||| | ||||| | || ||||| |||| || ||| | |||| | || Sbjct 150511 CTGGTCCACGATCTCAAGGACTGGGACAAACTCACGGACAATGAACGCCATTTCGTGAAG 150570 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | || ||||| || || |||||| ||||| ||||| || | | | | | Sbjct 150571 CATGTGCTTGCCTTTTTTGCAGCCAGCGATGGCATTGTGAACGAAAACCTCGCCATGA-A 150629 Query 57747 TTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 |||| ||| ||||||||||| | || || | ||||| ||||| ||||| | || || Sbjct 150630 TTTTAGCAAYGAAGTGCAAGTACCTGAAGCTCGCTGCTTCTACGGGTTTCAGATTGCGAT 150689 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 ||| || | || || || | |||||||| || || ||||| || | ||| | | Sbjct 150690 TGAGAATATTCACTCGGAGGTCTATTCGCTGCTTATTGATACATATATCAAGAATGCTGG 150749 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 ||||| ||| | || || || || || || || ||||| || | Sbjct 150750 AGAGAAGGACCATCTGCTGCGTGCCATTGATACGATACCATGTGTCAAAAAGAAAGCCAA 150809 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATCGCGT 57984 ||| || |||| ||| | | ||| | | || ||| ||| ||| | ||| | |||| Sbjct 150810 TTGGGCACTCAAGTGG-TGTGACCCGCGAGTGTCATCGTACGCAGAGCGTCTATTGGCGT 150868 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAG 58043 | ||| | || || || || ||||| || || ||| ||| | || |||||| ||||| Sbjct 150869 TTGCCTCGGTGGAGGGCATTTTCTTCTCCGGATCCTTCTGC-TCCATCTTTTGGCTGAAG 150927 Query 58044 AAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGT 58103 ||||| || || ||||| || || | || |||||| | || || || ||||| Sbjct 150928 AAACGTGGTCTTATGCCTGGTCTCAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGC 150987 Query 58104 CTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 | || || || ||||| || || ||||| || Sbjct 150988 ATGCACACGGACTTTGCTTGTCTCATGTATTC 151019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445744028098800