Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1101 210 3e-49 seq446 210 3e-49 seq3828 194 2e-44 >seq1101 Length=81374 Score = 210 bits (232), Expect = 3e-49 Identities = 417/610 (68%), Gaps = 13/610 (2%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| | ||| || || || ||||| ||||| || | |||||||| ||||| || | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | |||| || ||||| || ||||| || || |||||||| ||||| ||| ||||||| Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 7466 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 33748 | ||||| || || || || | ||||| || | || | |||| | || || | Sbjct 7465 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 7406 Query 33749 GCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 || | ||| |||||| | ||||||| ||| |||||||| ||||| || ||||| | Sbjct 7405 GCGGGTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTAT 7349 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | |||||| | |||| || || || | || || | ||| ||||| || | | Sbjct 7348 CAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCA 7289 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 | ||| | ||||| ||||| || ||||| || |||||||| |||||||| || | || Sbjct 7288 GCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAG 7229 Query 33928 CCTC-GGTAATCTGCACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33985 | || |||| | |||||||| | | ||||| | || | ||||| ||||| || || Sbjct 7228 CTTCAGGTACT-TGCACTTCGTTGCTAAAATTCATG-GCGAGGTTTTCGTTCACAATGCC 7171 Query 33986 ATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 34045 ||| |||||||||||||| || | ||||| || | |||| ||| | || || Sbjct 7170 ATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAG 7111 Query 34046 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 ||| | ||| || |||| ||| | | || | || || ||||||| || || || Sbjct 7110 TTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGC 7051 Query 34106 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 ||| ||||| || ||||| | ||| | ||| | | || || || |||| || || | Sbjct 7050 CTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACG 6991 Query 34166 ATTTGGATTT 34175 ||| || ||| Sbjct 6990 ATTGGGGTTT 6981 >seq446 Length=286769 Score = 210 bits (232), Expect = 3e-49 Identities = 417/610 (68%), Gaps = 13/610 (2%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| | ||| || || || ||||| ||||| || | |||||||| ||||| || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | |||| || ||||| || ||||| || || |||||||| ||||| ||| ||||||| Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 150896 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 33748 | ||||| || || || || | ||||| || | || | |||| | || || | Sbjct 150895 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 150836 Query 33749 GCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 || | ||| |||||| | ||||||| ||| |||||||| ||||| || ||||| | Sbjct 150835 GCGGGTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTAT 150779 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | |||||| | |||| || || || | || || | ||| ||||| || | | Sbjct 150778 CAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCA 150719 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 | ||| | ||||| ||||| || ||||| || |||||||| |||||||| || | || Sbjct 150718 GCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAG 150659 Query 33928 CCTC-GGTAATCTGCACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33985 | || |||| | |||||||| | | ||||| | || | ||||| ||||| || || Sbjct 150658 CTTCAGGTACT-TGCACTTCRTTGCTAAAATTCATG-GCGAGGTTTTCGTTCACAATGCC 150601 Query 33986 ATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 34045 ||| |||||||||||||| || | ||||| || | |||| ||| | || || Sbjct 150600 ATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAG 150541 Query 34046 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 ||| | ||| || |||| ||| | | || | || || ||||||| || || || Sbjct 150540 TTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGC 150481 Query 34106 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 ||| ||||| || ||||| | ||| | ||| | | || || || |||| || || | Sbjct 150480 CTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACG 150421 Query 34166 ATTTGGATTT 34175 ||| || ||| Sbjct 150420 ATTGGGGTTT 150411 >seq3828 Length=141882 Score = 194 bits (214), Expect = 2e-44 Identities = 999/1582 (63%), Gaps = 22/1582 (1%) Strand=Plus/Plus Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGA 62744 ||||| ||||| ||||| || ||||| || || || | || | ||| ||||| | Sbjct 94612 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGTTCGCTTTCAAACGCG 94671 Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804 ||||| | ||||| || || || || | || |||||||||||||| | ||| | || Sbjct 94672 TAATTCATAAGAATGAATGCATCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGG 94731 Query 62805 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62864 | | ||||||| ||| ||| |||| || || || || || | || |||| || || Sbjct 94732 CGCATATTAGACGTTTGAGCCTCTGCAACCGGGTAGTAGTTGACGTCGATAACCTTGTTA 94791 Query 62865 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT 62924 ||||| | | | || || |||||| | ||| || | ||||| || | | Sbjct 94792 AGATTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCAAAGGCACCGTTT 94851 Query 62925 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 ||||| | | || ||||| |||| || ||||| || || ||||| | | Sbjct 94852 TCAACAAATTTTGGTAGAGCCACAGACGCCAAGTTGCACACAGCCACTTCATTCGGCGAC 94911 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | ||| | || | |||| ||| | ||||| | ||| || || | ||| || || Sbjct 94912 GTATACTCCATCACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 94971 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 || ||| |||| ||| |||||| |||| || || || || || |||||||| Sbjct 94972 TTGGACTTACGGTTAACCGCGTCCTTAAAAAGCATAAACGGTACGCCCGTCTCAATCTGC 95031 Query 63105 GATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATAGATTTGT-ATCTCCT- 63160 | |||| || ||| ||| | | || | || || ||| | |||| | | | | Sbjct 95032 GCATCTAAGAT-GCTAAACCATAGCTGCT-GTGCATTAATTGT---TTTGCGAGCACGTC 95086 Query 63161 -TTCTCTTTCGTATAGAGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAAT 63218 ||| | |||||| | | || || ||||||||||||||||| | || | Sbjct 95087 CTTCCCGTTCGTACTTTTCAAA-AAGCGCCTCGAACTCGTCTCCCCAGCACTCGTAAAGA 95145 Query 63219 CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63278 ||| ||| | ||||| | || ||||| || | | | ||| ||||||||| Sbjct 95146 GCAGGTGCTTCGTTTGGACAAAATAAACTCCACTTGCCATTGGCTTCCACCCGTTTCATA 95205 Query 63279 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 || | |||||||| |||||| || |||| || | | || ||| ||| || || Sbjct 95206 AACAAATCAGGAACCCAAAGGGCGTAGAATAAGTCACGCGCTCGGTGTAGCTCATTACCG 95265 Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 ||||| ||| || || ||| | | | || | ||||||||| |||||||||| Sbjct 95266 TGGTTCTTACGAAGGTCCAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATACA 95325 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | | || ||||| ||| || || || | ||||| || |||| ||| | Sbjct 95326 GCAAAAGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAAC 95385 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518 || | |||||| ||||| || ||||| || ||||| || || ||||| | | Sbjct 95386 ACACGCAACATAGGAATGATCCCGTTAGAGGACCCATTAGTGCCACGAATATAACTGTTA 95445 Query 63519 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 |||| || || | | | | |||| || ||||| || ||| || || || ||| Sbjct 95446 GTGGCTCGTATGTTGTGCATACTGAT--GCCAATTCCACCCGCCCACTTGGAAATGCATG 95503 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | ||| |||| || |||||||| || ||||| || |||||| ||| |||| || Sbjct 95504 CACATTGTTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAA 95563 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 | || |||| |||| |||||| |||||| |||||||| || || || | || |||| Sbjct 95564 ARCACGAGGACAGTTGGGGACGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGCG 95623 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| | || | ||| | | | ||||||||| | ||| | | |||| | | | Sbjct 95624 TAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGGATATTGCTCTTGT 95683 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 | || |||| || || ||||| | | || || || | || || | ||| || | Sbjct 95684 GGATACCTAACGCAACGCGCATAATTAAYTGTTGCGGCCGCTCCACGACTTTACCATTAA 95743 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 || | || ||| || | ||||| || || ||||| | || |||||| | Sbjct 95744 CACGAAAAAGATATCCTTTCTCGAGCGTTTTRAACCCGAAATAATCATACTCAAAGTCCC 95803 Query 63877 GTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAA 63936 | |||| ||||| | ||||| |||| ||| || | | | || || || | | Sbjct 95804 GGTCGTRRATAATTGCAGAATTAAGCTCATCTTTGTGCTGCATCACGATCTCGTAGACAT 95863 Query 63937 TACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 63996 | | || | ||||| | || |||| || ||||| ||| | || | | Sbjct 95864 CATCAGCTATGAGCGGAGCAGCAGCTCCTGTTTTCTCATGAACATTYTTGTAAAATACTT 95923 Query 63997 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGG 64056 | || ||||| || | || ||||| | ||||||||||| || | ||| || | | Sbjct 95924 CGATATTGTCACTGAAGACCTTGTTTGTATTTTTGTGTAGATTCGACACGGCAATACGTG 95983 Query 64057 CGGCTAGAATGGCATAATCCGGATGTTGTGTAGT---ACAAGTGGCTGCTATTTCGGCTG 64113 | || || ||| | | || ||||| || ||| | |||| ||||| |||| || | Sbjct 95984 CCGCCAGCTTGGAAAAGTCGGGATGCTGCGTACTCTGGCAAGCGGCTG---TTTCAGCAG 96040 Query 64114 CCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64173 |||| ||||| ||| || ||||| || || | || | |||||| | Sbjct 96041 CCAGCTCGTCCAGTTCCGAAGTGGTTACACCCGGGTACACACCCGCCACGACCTTCTGCG 96100 Query 64174 CTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAG 64233 || ||||| | ||| || | ||| | || | || ||||| | || | || || | Sbjct 96101 AGATCTTAATGGCATCAATGTAATCTGGATTGAGCCCGTAGCAAAGCTTAGTTATGCGTG 96160 Query 64234 ACGTGATTTTATCAAACATGAC 64255 |||||||| |||||| |||| Sbjct 96161 CTGTGATTTTGTCAAACTTGAC 96182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629785991029200