Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1101 205 1e-47 seq446 205 1e-47 seq3828 172 7e-38 >seq1101 Length=81374 Score = 205 bits (226), Expect = 1e-47 Identities = 412/601 (69%), Gaps = 9/601 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||| | ||| || || || ||| | ||||| || | |||||||| ||||| || | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | |||| || ||||| || ||||| || || |||||||| ||||| ||| || ||||| Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 7467 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACT 36327 || |||||||| || || || | ||||| || | || | |||| | || | |||| Sbjct 7466 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACT 7407 Query 36328 GTCATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | || | ||||| | ||||||| ||| |||||||| ||||| || || || || Sbjct 7406 CGCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCA 7347 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || ||| | |||| || || || | || || | |||||||||||| | || Sbjct 7346 ATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGC 7287 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||| | ||||| ||||| || ||||| || || ||||| |||||||| || | ||| Sbjct 7286 GAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCT 7227 Query 36506 TC-GGTAATCTGTACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 36563 || |||| | || ||||| | | ||||| | || | ||||| ||||| || || | Sbjct 7226 TCAGGTACT-TGCACTTCGTTGCTAAAATTCAT-GGCGAGGTTTTCGTTCACAATGCCAT 7169 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTT 36623 | |||||||||||||| || | ||||| || | |||| ||| || || |||| Sbjct 7168 CGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTT 7109 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | | ||| || |||| ||| | | || | || || ||||||| || || |||| Sbjct 7108 TGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCT 7049 Query 36684 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 36743 | ||||| || ||||| | ||| | ||| | | ||||| ||||||| || || | || Sbjct 7048 CGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACGAT 6989 Query 36744 T 36744 | Sbjct 6988 T 6988 >seq446 Length=286769 Score = 205 bits (226), Expect = 1e-47 Identities = 412/601 (69%), Gaps = 9/601 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||| | ||| || || || ||| | ||||| || | |||||||| ||||| || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | |||| || ||||| || ||||| || || |||||||| ||||| ||| || ||||| Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 150897 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACT 36327 || |||||||| || || || | ||||| || | || | |||| | || | |||| Sbjct 150896 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACT 150837 Query 36328 GTCATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | || | ||||| | ||||||| ||| |||||||| ||||| || || || || Sbjct 150836 CGCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCA 150777 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || ||| | |||| || || || | || || | |||||||||||| | || Sbjct 150776 ATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGC 150717 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||| | ||||| ||||| || ||||| || || ||||| |||||||| || | ||| Sbjct 150716 GAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCT 150657 Query 36506 TC-GGTAATCTGTACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 36563 || |||| | || ||||| | | ||||| | || | ||||| ||||| || || | Sbjct 150656 TCAGGTACT-TGCACTTCRTTGCTAAAATTCAT-GGCGAGGTTTTCGTTCACAATGCCAT 150599 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTT 36623 | |||||||||||||| || | ||||| || | |||| ||| || || |||| Sbjct 150598 CGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTT 150539 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | | ||| || |||| ||| | | || | || || ||||||| || || |||| Sbjct 150538 TGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCT 150479 Query 36684 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 36743 | ||||| || ||||| | ||| | ||| | | ||||| ||||||| || || | || Sbjct 150478 CGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACGAT 150419 Query 36744 T 36744 | Sbjct 150418 T 150418 >seq3828 Length=141882 Score = 172 bits (190), Expect = 7e-38 Identities = 1000/1586 (63%), Gaps = 30/1586 (2%) Strand=Plus/Plus Query 65478 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 65537 ||||| ||||| || || || ||||| || || || | || | ||| ||||| | Sbjct 94612 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGTTCGCTTTCAAACGCG 94671 Query 65538 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 65597 ||||| | ||||| || || || || | || |||||||||||||| | ||| | || Sbjct 94672 TAATTCATAAGAATGAATGCATCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGG 94731 Query 65598 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 65657 | | ||||||| ||| ||| |||| || || || || || | || |||| || || Sbjct 94732 CGCATATTAGACGTTTGAGCCTCTGCAACCGGGTAGTAGTTGACGTCGATAACCTTGTTA 94791 Query 65658 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCT 65717 ||||| | | | || || |||||| | ||| || | ||||| || | Sbjct 94792 AGATTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCAAAGG---CACCG 94848 Query 65718 ATTACAA-ACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 65774 || ||| | || || | || ||||| |||| || || || || || ||||| | Sbjct 94849 TTTTCAACAAATTTTGGTAGAGCCACAGACGCCAAGTTGCACACAGCCACTTCATTCGGC 94908 Query 65775 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 65834 || ||| | || | |||| ||| | ||||| | ||| || || | ||| || Sbjct 94909 GACGTATACTCCATCACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGC 94968 Query 65835 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 65894 || || ||| |||| ||| |||||| |||| || || || || || |||||| Sbjct 94969 TGGTTGGACTTACGGTTAACCGCGTCCTTAAAAAGCATAAACGGTACGCCCGTCTCAATC 95028 Query 65895 TGAGATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATAGATTTGT-ATCTC 65951 || | |||| || ||| ||| | | || | || || ||| | |||| | | | Sbjct 95029 TGCGCATCTAAGAT-GCTAAACCATAGCTGCT-GTGCATTAATTGT---TTTGCGAGCAC 95083 Query 65952 TT--TTCTCTTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCC 66008 | ||| | |||||| | | | || || ||||||||||||||||| | || Sbjct 95084 GTCCTTCCCGTTCGTACTTTTCAAA-AAGCGCCTCGAACTCGTCTCCCCAGCACTCGTAA 95142 Query 66009 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 66068 | |||| ||| | ||||| | || ||||| || | | | ||| |||||| Sbjct 95143 AGAGCAGGTGCTTCGTTTGGACAAAATAAACTCCACTTGCCATTGGCTTCCACCCGTTTC 95202 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTT 66128 ||||| | |||||||| |||||| || ||||| || | | || ||| ||| || Sbjct 95203 ATAAACAAATCAGGAACCCAAAGGGCGTAGAATAAGTCACGCGCTCGGTGTAGCTCATTA 95262 Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 || ||||| ||| || || ||| | | | || ||||||||| ||||||||| Sbjct 95263 CCGTGGTTCTTACGAAGGTCCAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTAT 95322 Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248 | || | | || ||||| ||| || || || | ||||| || |||| ||| Sbjct 95323 ACAGCAAAAGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTA 95382 Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 66308 | || | |||||| ||||| || || || || | ||||| || || ||||| || Sbjct 95383 AACACACGCAACATAGGAATGATCCCGTTAGAGGACCCATTAGTGCCACGAATATAACTG 95442 Query 66309 CCACTTGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 66366 | | || || || | | | | |||| || ||||| || ||| || || || Sbjct 95443 TTAGTGGCTCGTATGTTGTGCATACTGAT--GCCAATTCCACCCGCCCACTTGGAAATGC 95500 Query 66367 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426 |||| ||| |||| || || ||||| || || || || ||||||| ||| |||| Sbjct 95501 ATGCACATTGTTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTA 95560 Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 ||| || |||| |||| ||||| |||||| |||||||| || || || | || | Sbjct 95561 AAAARCACGAGGACAGTTGGGGACGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCAT 95620 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546 ||||||| | || | ||| | | | ||||||||| | ||| | | |||| | | Sbjct 95621 GCGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGGATATTGCTCT 95680 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 || || |||| || || ||||| | | || || || | || |||| ||| Sbjct 95681 TGTGGATACCTAACGCAACGCGCATAATTAAYTGTTGCGGCCGCTCCACGA-CTTTACCA 95739 Query 66607 TTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 66665 ||| || ||| || ||| || | ||||| || || ||||| | || |||| Sbjct 95740 TTAACACGAAAAAGATATCCTTTCTCGAGCGTTTTRAACCCGAAATAATCATACTCAAAG 95799 Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 66725 || || |||| ||||| | || || || | ||| || | | | || | || | Sbjct 95800 TCCCGGTCGTRRATAATTGCAGAATTAAGCTCATCTTTGTGCTGCATCACGATCTCGTAG 95859 Query 66726 GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAA 66785 | | | || | ||||| | || |||| || |||| ||| | || Sbjct 95860 ACATCATCAGCTATGAGCGGAGCAGCAGCTCCTGTTTTCTCATGAACATTYTTGTAAAAT 95919 Query 66786 TCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATT 66845 | || || ||||| || | || ||||| | |||||||||||| || ||||| || Sbjct 95920 ACTTCGATATTGTCACTGAAGACCTTGTTTGTATTTTTGTGTAGATTCGACACGGCAATA 95979 Query 66846 CTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGT---ACAAGTGGCTGCTATTTCG 66902 | || || | ||| | | || ||||| || ||| | |||| ||||| |||| Sbjct 95980 CGTGCCGCCAGCTTGGAAAAGTCGGGATGCTGCGTACTCTGGCAAGCGGCTG---TTTCA 96036 Query 66903 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 66962 || ||||| ||||| ||| || ||||| || || | || | |||||| Sbjct 96037 GCAGCCAGCTCGTCCAGTTCCGAAGTGGTTACACCCGGGTACACACCCGCCACGACCTTC 96096 Query 66963 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATA 67022 | || ||||| | ||| || | ||| | || | || || || | || | || Sbjct 96097 TGCGAGATCTTAATGGCATCAATGTAATCTGGATTGAGCCCGTAGCAAAGCTTAGTTATG 96156 Query 67023 CGAGATGTGATTTTATCAAACATGAC 67048 || | ||||||||| |||||| |||| Sbjct 96157 CGTGCTGTGATTTTGTCAAACTTGAC 96182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658139767952600