Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1113 136 3e-27 >seq1113 Length=254142 Score = 136 bits (150), Expect = 3e-27 Identities = 412/627 (66%), Gaps = 12/627 (2%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| ||||||||||| || | | || ||| | | || || || ||||| || || Sbjct 12942 CGGGAACGGACGCGGTGTACGCGTCAACTGTTGTCGAAGTGGCTCTACGTGATTCAGATA 13001 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 | || |||||||| | | || | || || || | |||| || || || || Sbjct 13002 GATATGCGCGTCACCGATGACATGGATGAACTCGCCAGCTTTCAGTCCTACCACTTGCGC 13061 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 || || | |||||| | || |||||||| || |||||||| || || || || || || Sbjct 13062 GACCAAACGCGTCAGCAACGCATAGCTGGCAATATTAAACGGCACGCCTAGTCCAATATC 13121 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | ||||||| |||||| ||||| || | ||||||||||||||||| || Sbjct 13122 GGCCGAGCGTTGGTACATCTGGCACGACAGTTCATCATCCGCCACGTAAAACTGACAAAA 13181 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || ||||| | ||||| || || || || ||||| || ||| || Sbjct 13182 CATGTGGCACGGAGGCAATGCCATTTCATTCAGATCAGCCGGATTCCAAGCTGACAGCAC 13241 Query 21188 GATGCGCCGATCGTGGGGCCGCCTGTTAA--TTA--GATCCACCACGTAACGCAGCTGGT 21243 || || || || | ||| | || | ||| ||| |||| || | ||||||| Sbjct 13242 AATTCGGCGGTCATTGGGATTCGTGCGGAGCTTATGGAT-CACCTCGGCA---AGCTGGT 13297 Query 21244 CCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCC 21303 |||| || || || |||| ||||| || |||||| || |||||||| | || Sbjct 13298 CCACGCCTTGGCCGCTATAGTCGGCGTGCATATCCGTGTACTTGGCACCAAAATGGCGCC 13357 Query 21304 ACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG 21363 | || || || || ||||| || ||||| ||| | || || | | || ||| | | Sbjct 13358 ATTGAAAACCATAAACCGGTCCAAGATCTCCCACCTCGC-GTGACTGCAGTCCTCTACTG 13416 Query 21364 -CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGC-GACAGTTC 21421 |||| | |||| ||||| | |||||||||| | || || || | Sbjct 13417 TCCAAGTACTCGCGCGACCCATTGCCGTCCCAAATGTGAACATTCTTTTGCTGAAGCGTG 13476 Query 21422 GGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAA 21481 | | | || ||| || || |||||||||||||||||||| | || || | |||||| Sbjct 13477 TGCGCATTC-GTGTCACCACTAATAAACCACAGCAACTCCTCGGCCACACCACGCCAAAA 13535 Query 21482 CACCCTTTTGGTGGTTAACAGAGGAAA 21508 |||| | || || || | || ||||| Sbjct 13536 CACCTTCTTCGTCGTCAGCAACGGAAA 13562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427755067717200