Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1101 226 4e-54 seq446 226 4e-54 seq3828 203 5e-47 >seq1101 Length=81374 Score = 226 bits (250), Expect = 4e-54 Identities = 423/613 (69%), Gaps = 19/613 (3%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| | ||| || || || ||||| ||||| || | ||||||||| ||||| || | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | |||| || ||||| || ||||| || || |||||||| ||||| ||| || || || Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 7467 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-------ACT 50123 || ||||| || || || || | |||||| || | || | |||| | || ||| Sbjct 7466 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACT 7407 Query 50124 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 50183 ||| |||| |||||| | ||||||| ||| |||||||| ||||| || ||||| Sbjct 7406 CGCGG-GTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGT 7351 Query 50184 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA 50243 || |||||| | |||| || || || | || || | ||| ||||| || | Sbjct 7350 ATCAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAG 7291 Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303 || ||| | ||||| ||||| || ||||| || |||||||| |||||||| || | Sbjct 7290 CAGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCG 7231 Query 50304 AGCCTC-GGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTAT 50360 ||| || |||| | |||||||| | | ||| |||| || | ||||| ||||| || Sbjct 7230 AGCTTCAGGTACT-TGCACTTCGTTGCTAAAA--TTCATGGCGAGGTTTTCGTTCACAAT 7174 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420 || || |||||||||||||| || | ||||| || | ||||| ||| ||| || Sbjct 7173 GCCATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGT 7114 Query 50421 TAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 50480 ||||| | ||| || |||| ||| | | || | || || ||||||| || || Sbjct 7113 GAGTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGA 7054 Query 50481 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||||| ||||| || ||||| | ||| | ||| | | || || || |||| || || Sbjct 7053 AGCCTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAA 6994 Query 50541 TCTATTTGGATTT 50553 | ||| || ||| Sbjct 6993 ACGATTGGGGTTT 6981 >seq446 Length=286769 Score = 226 bits (250), Expect = 4e-54 Identities = 423/613 (69%), Gaps = 19/613 (3%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| | ||| || || || ||||| ||||| || | ||||||||| ||||| || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | |||| || ||||| || ||||| || || |||||||| ||||| ||| || || || Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 150897 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-------ACT 50123 || ||||| || || || || | |||||| || | || | |||| | || ||| Sbjct 150896 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACT 150837 Query 50124 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 50183 ||| |||| |||||| | ||||||| ||| |||||||| ||||| || ||||| Sbjct 150836 CGCGG-GTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGT 150781 Query 50184 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA 50243 || |||||| | |||| || || || | || || | ||| ||||| || | Sbjct 150780 ATCAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAG 150721 Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303 || ||| | ||||| ||||| || ||||| || |||||||| |||||||| || | Sbjct 150720 CAGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCG 150661 Query 50304 AGCCTC-GGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTAT 50360 ||| || |||| | |||||||| | | ||| |||| || | ||||| ||||| || Sbjct 150660 AGCTTCAGGTACT-TGCACTTCRTTGCTAAAA--TTCATGGCGAGGTTTTCGTTCACAAT 150604 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420 || || |||||||||||||| || | ||||| || | ||||| ||| ||| || Sbjct 150603 GCCATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGT 150544 Query 50421 TAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 50480 ||||| | ||| || |||| ||| | | || | || || ||||||| || || Sbjct 150543 GAGTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGA 150484 Query 50481 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||||| ||||| || ||||| | ||| | ||| | | || || || |||| || || Sbjct 150483 AGCCTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAA 150424 Query 50541 TCTATTTGGATTT 50553 | ||| || ||| Sbjct 150423 ACGATTGGGGTTT 150411 >seq3828 Length=141882 Score = 203 bits (224), Expect = 5e-47 Identities = 963/1513 (64%), Gaps = 31/1513 (2%) Strand=Plus/Plus Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146 ||| |||| || || || ||||| || | || || || || || | || || ||| Sbjct 94339 CGATTGTACATGTTCGACGTGTATGGCTCGATGGACTCGTTGTTACCAAGGATCTGGGCA 94398 Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTA--TGATCTGA 79204 || || || || ||||| || ||||| | ||| || | | ||||| | ||| | Sbjct 94399 GTCGAAGCAGTAGGCATGGGAGCCACTAGCAAAGAGTTGCGGATACCGTGCTTAATCACA 94458 Query 79205 TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA---CGGGACAACATTCCAAAGAT 79261 || | | || |||| |||| ||||||||| |||| ||| | ||| ||| | | Sbjct 94459 TTCTTT--TTCAGAGCGACCCAGTCCCAAAGACCAGAGGACGGAATGACACCCCACATGT 94516 Query 79262 CATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCC---TT 79318 || | || | ||||| || ||||| || || ||||||| || || || || Sbjct 94517 CAAACTGGAAGATACCCTTGCTAGCCGGGGAGCCCTGAAATGTTTCGTACGGGCCCAGTT 94576 Query 79319 CCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCT 79378 |||| ||| | || | ||| | | | ||||| ||||| || ||||| | Sbjct 94577 CCTT---GGCAATCTCCATGGATGTCTCCATCGAAGCATAATAGATGGTCTCAAAAATAT 94633 Query 79379 TCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 79438 |||| || || || | || | | ||| ||||| | ||||| | ||||| || || | Sbjct 94634 TCTTGTTCAGTTCACGAGCCTGTTCGCTTTCAAACGCGTAATTCATAAGAATGAATGCAT 94693 Query 79439 CTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTT 79498 | || | || |||||||||||||| | ||| | || | | ||||||| ||| ||| | Sbjct 94694 CGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATATTAGACGTTTGAGCCT 94753 Query 79499 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGA 79558 ||| || || || || || | || |||| || || ||||| | | | || || Sbjct 94754 CTGCAACCGGGTAGTAGTTGACGTCGATAACCTTGTTAAGATTACGGGTGACCACCTTCG 94813 Query 79559 CCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTACAAACATGTTCAACGCGA 79618 |||||| | || || | ||||| || | | ||||| | | || | Sbjct 94814 TCACATCATACAGCTTCTTGTAGTCAAAGGCACCGTTTTCAACAAATTTTGGTAGAGCCA 94873 Query 79619 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGC 79678 |||| |||| || || || || || ||||| | || ||| | || | ||| || Sbjct 94874 CAGACGCCAAGTTGCACACAGCCACTTCATTCGGCGACGTATACTCCATCACCTCACAGC 94933 Query 79679 AGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 79738 | | |||||| | || || || | ||| || || || ||| |||| ||| | Sbjct 94934 ACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTAACCGCGT 94993 Query 79739 CCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT-CCAG 79797 ||||| |||| || ||||| || || |||||||| | |||| || ||| ||| Sbjct 94994 CCTTAAAAAGCATAAACGGTACGCCCGTCTCAATCTGCGCATCTAAGAT-GCTAAACCAT 95052 Query 79798 A-CGACTCGAGCCTTTATTATAGACTTGT-ATCTCTT--TTCTCTTTCGTATTGTGTATA 79853 | | || | || || ||| | ||| | | | | ||| | |||||| | | | | Sbjct 95053 AGCTGCT-GTGCATTAATTGTT---TTGCGAGCACGTCCTTCCCGTTCGTACTTTTCAAA 95108 Query 79854 TAATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACA 79912 || || ||||||||||||||||| |||| | |||| ||||| ||||| | Sbjct 95109 -AAGCGCCTCGAACTCGTCTCCCCAGCACTCGTAAAGAGCAGGTGCTTCGTTTGGACAAA 95167 Query 79913 TCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972 || ||||| |||| | | || ||||||||||| | |||||||| |||||| | Sbjct 95168 ATAAACTCCACTTGCCATTGGCTTCCACCCGTTTCATAAACAAATCAGGAACCCAAAGGG 95227 Query 79973 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 80032 | |||| || | | || || ||| || || ||||| ||| || || | Sbjct 95228 CGTAGAATAAGTCACGCGCTCGGTGTAGCTCATTACCGTGGTTCTTACGAAGGTCCAGAA 95287 Query 80033 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGT-CGTTTG 80091 || | | | || | ||||||||| |||||||||| | || || ||| | ||||| Sbjct 95288 ACTCAAACACGTCGGCATGCCACGGCTCCAAGTATACAG-CAAAAGACCCTTTGCGTTTA 95346 Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151 ||| || || || | ||||| || |||| ||| | || | |||||| ||||| || Sbjct 95347 CCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAACACACGCAACATAGGAATGATC 95406 Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAA 80209 || || || | ||||| || || ||||| || | |||| || || | | | | Sbjct 95407 CCGTTAGAGGACCCATTAGTGCCACGAATATAACTGTTAGTGGCTCGTATGTTGTGCATA 95466 Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269 |||| || ||||| || ||| || || || |||| ||| |||| || || |||| Sbjct 95467 CTGAT--GCCAATTCCACCCGCCCACTTGGAAATGCATGCACATTGTTTCAATGTGTCAT 95524 Query 80270 AGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329 | || || || || |||||| ||| |||| ||| || |||| |||| ||| Sbjct 95525 AAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAAARCACGAGGACAGTTGGGGAC 95584 Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389 || |||||| |||||||| || || || | || |||||||| | || | ||||| | Sbjct 95585 GAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGCGTAAAAAACTTCTGAGACATCA 95644 Query 80390 GATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCA 80449 | ||||||||| | ||| | || |||| | | || || |||| ||| || |||| Sbjct 95645 ACTCGTACGTCTCCAAAGCCGCTTGGATATTGCTCTTGTGGATACCTAACGCAACGCGCA 95704 Query 80450 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTT 80509 | | | || || || | || |||| || ||| | || | || ||| | Sbjct 95705 TAATTAAYTGTTGCGGCCGCTCCACGACTTTACCATTAACACGAAAAAGATATCCTTTCT 95764 Query 80510 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 | | ||||| || || ||||| | || |||||| || |||| ||||| | || | Sbjct 95765 CGAGCGTTTTRAACCCGAAATAATCATACTCAAAGTCCCGGTCGTRRATAATTGCAGAAT 95824 Query 80570 TGAGTTTATCCTT 80582 | || | ||| || Sbjct 95825 TAAGCTCATCTTT 95837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718232751884600