Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1101 129 6e-25 seq446 129 6e-25 >seq1101 Length=81374 Score = 129 bits (142), Expect = 6e-25 Identities = 295/434 (68%), Gaps = 10/434 (2%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| || || | ||||||||| | |||||| || |||||||| || | | Sbjct 7578 ACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAG 7519 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGA 13989 || ||||| | || ||||| || | |||||| || | |||| || || ||||| |||| Sbjct 7518 ACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGG-AGCAGAAGGATCCGGAGAAGA 7460 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG-CTTTTTTGTTC 14048 | || ||||| || | |||||||| | || || ||| | |||||| | | | Sbjct 7459 AAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTCGCGGGT 7400 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | | ||| || ||||| | | ||| ||||| | | | || || ||||| ||| Sbjct 7399 CACA-CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCA 7341 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 | | || ||||||||| || | ||||| || ||||||||||||| | || Sbjct 7340 CGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATAT--ATGTATCAATAAGCAGCGAAT 7283 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 | | || ||||| || || || || || |||||||| || || ||||| | |||||| | Sbjct 7282 AGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAG 7223 Query 14227 ACCATTGTACTTCCGAG-TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 ||| ||||| | |||||| | ||| | ||||| || || || ||||| || Sbjct 7222 GTACTTGCACTTCGTTGCTAAAATTCAT-GGCGAGGTTTTCGTTCACAATGCCATCGCTG 7164 Query 14286 GCTGCAAAAAATGC 14299 ||||||||||| || Sbjct 7163 GCTGCAAAAAAGGC 7150 >seq446 Length=286769 Score = 129 bits (142), Expect = 6e-25 Identities = 295/434 (68%), Gaps = 10/434 (2%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| || || | ||||||||| | |||||| || |||||||| || | | Sbjct 151008 ACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAG 150949 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGA 13989 || ||||| | || ||||| || | |||||| || | |||| || || ||||| |||| Sbjct 150948 ACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGG-AGCAGAAGGATCCGGAGAAGA 150890 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG-CTTTTTTGTTC 14048 | || ||||| || | |||||||| | || || ||| | |||||| | | | Sbjct 150889 AAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTCGCGGGT 150830 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | | ||| || ||||| | | ||| ||||| | | | || || ||||| ||| Sbjct 150829 CACA-CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCA 150771 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 | | || ||||||||| || | ||||| || ||||||||||||| | || Sbjct 150770 CGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATAT--ATGTATCAATAAGCAGCGAAT 150713 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 | | || ||||| || || || || || |||||||| || || ||||| | |||||| | Sbjct 150712 AGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAG 150653 Query 14227 ACCATTGTACTTCCGAG-TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 ||| ||||| | |||||| | ||| | ||||| || || || ||||| || Sbjct 150652 GTACTTGCACTTCRTTGCTAAAATTCAT-GGCGAGGTTTTCGTTCACAATGCCATCGCTG 150594 Query 14286 GCTGCAAAAAATGC 14299 ||||||||||| || Sbjct 150593 GCTGCAAAAAAGGC 150580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479703923651000