Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3828 217 2e-51 seq1101 192 8e-44 seq446 192 8e-44 >seq3828 Length=141882 Score = 217 bits (240), Expect = 2e-51 Identities = 1030/1620 (64%), Gaps = 22/1620 (1%) Strand=Plus/Plus Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG 71497 ||||||| ||||| || ||||| ||||| || || || | || | ||| ||||| | Sbjct 94610 CATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGTTCGCTTTCAAACG 94669 Query 71498 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGT 71557 ||||| | ||||| || || || || | || ||||| |||||||| | ||| | || Sbjct 94670 CGTAATTCATAAGAATGAATGCATCGGCCAGACCCTGAACACCAATACCCACAGGGCGGT 94729 Query 71558 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617 | | | ||||||| ||| ||| |||| || || || || || | || |||| || | Sbjct 94730 GGCGCATATTAGACGTTTGAGCCTCTGCAACCGGGTAGTAGTTGACGTCGATAACCTTGT 94789 Query 71618 TGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCAT 71677 | ||||| | | | || || |||||| | || || | ||||| || | Sbjct 94790 TAAGATTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCAAAGGCACCGT 94849 Query 71678 CTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 71737 | ||||| | || ||||| |||| || || || || || ||||| | Sbjct 94850 TTTCAACAAATTTTGGTAGAGCCACAGACGCCAAGTTGCACACAGCCACTTCATTCGGCG 94909 Query 71738 CGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 71797 | ||| | || | ||| ||| | ||||| | ||| || || | ||| || | Sbjct 94910 ACGTATACTCCATCACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCT 94969 Query 71798 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 | || ||| |||| ||| |||||| |||| |||||||| || || ||||||| Sbjct 94970 GGTTGGACTTACGGTTAACCGCGTCCTTAAAAAGCATAAACGGTACGCCCGTCTCAATCT 95029 Query 71858 GAGATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATATT-CTTGTATCTCT 71914 | | |||| || ||| ||| | | || | || || ||| | || | | | || Sbjct 95030 GCGCATCTAAGAT-GCTAAACCATAGCTGCT-GTGCATTAATTGTTTTGCGAGCACGTCC 95087 Query 71915 TTTCTCTTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAGCA-TTGTCTAA 71972 || | | |||||| | | | | || || |||||||||||||||| |||| | || | Sbjct 95088 TTCC-CGTTCGTACTTTTCAAA-AAGCGCCTCGAACTCGTCTCCCC-AGCACTCGTAAAG 95144 Query 71973 TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCAT 72032 |||| ||| || ||||| | || ||||| |||| | | || |||||||| Sbjct 95145 AGCAGGTGCTTCGTTTGGACAAAATAAACTCCACTTGCCATTGGCTTCCACCCGTTTCAT 95204 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 ||| | |||||||| |||||| || |||| || | | || || ||| || || Sbjct 95205 AAACAAATCAGGAACCCAAAGGGCGTAGAATAAGTCACGCGCTCGGTGTAGCTCATTACC 95264 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||||| ||| || || ||| | | | || | ||||||||| |||||||||| Sbjct 95265 GTGGTTCTTACGAAGGTCCAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATAC 95324 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 || | | || ||||| ||| || || || | ||||| || |||| ||| | Sbjct 95325 AGCAAAAGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAA 95384 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 || | |||||| ||||| || || || || | ||||| || || ||||| || Sbjct 95385 CACACGCAACATAGGAATGATCCCGTTAGAGGACCCATTAGTGCCACGAATATAACTGTT 95444 Query 72273 ACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 | |||| || || | ||| | |||| || ||||| || ||| || || || || Sbjct 95445 AGTGGCTCGTATGTTGTGCATACTGAT--GCCAATTCCACCCGCCCACTTGGAAATGCAT 95502 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || ||| |||| || || ||||| || || || || ||||||| ||| |||| | Sbjct 95503 GCACATTGTTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAA 95562 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || || |||| |||| ||||| |||||| |||||||| || || || | || ||| Sbjct 95563 AARCACGAGGACAGTTGGGGACGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGC 95622 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 72510 ||||| | || | ||||| | | ||||||||| | ||| | || |||| | | Sbjct 95623 GTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGGATATTGCTCTTG 95682 Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 || || |||| ||| || ||||| | | || || || | || |||| || ||| Sbjct 95683 TGGATACCTAACGCAACGCGCATAATTAAYTGTTGCGGCCGCTCCACGACTTTACCATTA 95742 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630 | || | || ||| || | ||||| || || ||||| | || |||||| Sbjct 95743 ACACGAAAAAGATATCCTTTCTCGAGCGTTTTRAACCCGAAATAATCATACTCAAAGTCC 95802 Query 72631 CGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTG 72690 || |||| ||||| | ||||| || | ||| || | | | || || | | | | Sbjct 95803 CGGTCGTRRATAATTGCAGAATTAAGCTCATCTTTGTGCTGCATCACGATCT-CGTAGAC 95861 Query 72691 AT-ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 72749 || | | || | ||||| | || |||| || ||||| ||| | || | Sbjct 95862 ATCATCAGCTATGAGCGGAGCAGCAGCTCCTGTTTTCTCATGAACATTYTTGTAAAATAC 95921 Query 72750 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 72809 || || ||||| || | || ||||| | ||||||||||| || ||||| || | Sbjct 95922 TTCGATATTGTCACTGAAGACCTTGTTTGTATTTTTGTGTAGATTCGACACGGCAATACG 95981 Query 72810 GGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGT---ACAAGTGGCTGCTATTTCTGC 72866 || || || ||| | | || ||||| || ||| | |||| ||||| |||| || Sbjct 95982 TGCCGCCAGCTTGGAAAAGTCGGGATGCTGCGTACTCTGGCAAGCGGCTG---TTTCAGC 96038 Query 72867 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||||| ||||| ||| || ||||| || || | || | |||||| Sbjct 96039 AGCCAGCTCGTCCAGTTCCGAAGTGGTTACACCCGGGTACACACCCGCCACGACCTTCTG 96098 Query 72927 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 72986 | || ||||| | ||| || | ||| | || | || || || | || | || || Sbjct 96099 CGAGATCTTAATGGCATCAATGTAATCTGGATTGAGCCCGTAGCAAAGCTTAGTTATGCG 96158 Query 72987 AGACGTGATTTTATCAAACATAACATTTTCCCGGCATCCATTTCGTTTAACGACAAACAT 73046 | |||||||| |||||| | || | || || | |||| || || ||||| |||| Sbjct 96159 TGCTGTGATTTTGTCAAACTTGACGTCCTCACGACGACCATCGCGCTTGACGACGTACAT 96218 >seq1101 Length=81374 Score = 192 bits (212), Expect = 8e-44 Identities = 414/611 (68%), Gaps = 15/611 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||| | ||| || || || ||||| |||||||| | |||||||| ||||| || | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | |||| || ||||| || ||||| || || |||||||| || || ||| || ||||| Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 7467 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACT 42234 || ||||| || || || || | ||||| || | || | |||| | || | |||| Sbjct 7466 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACT 7407 Query 42235 GTCATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || | ||||| | ||||||| ||| |||||||| ||||| || ||||| || Sbjct 7406 CGCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCA 7347 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 |||||| | |||| || || || | || || | ||||||||| || | || Sbjct 7346 ATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGC 7287 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||| | || || ||||| || ||||| || |||||||| |||||||| || | || Sbjct 7286 GAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCT 7227 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGT 42470 || | || || ||||| | | ||| |||| || | ||||||||||| || || | Sbjct 7226 TCAGGTACTTGCACTTCGTTGCTAAAA--TTCATGGCGAGGTTTTCGTTCACAATGCCAT 7169 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCCGGTGTTA 42527 | |||||||||||||| || | ||||| || | |||| || | |||| || | Sbjct 7168 CGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCC---GTGA 7112 Query 42528 ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 ||| | ||| || |||| ||| | | || | || || | ||||| || || | Sbjct 7111 GTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAG 7052 Query 42588 CTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 | || ||||| || ||||| | ||| | || | | ||||| || |||| || || | Sbjct 7051 CCTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAAC 6992 Query 42648 TATTTGGATTT 42658 ||| || ||| Sbjct 6991 GATTGGGGTTT 6981 >seq446 Length=286769 Score = 192 bits (212), Expect = 8e-44 Identities = 414/611 (68%), Gaps = 15/611 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||| | ||| || || || ||||| |||||||| | |||||||| ||||| || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | |||| || ||||| || ||||| || || |||||||| || || ||| || ||||| Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 150897 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACT 42234 || ||||| || || || || | ||||| || | || | |||| | || | |||| Sbjct 150896 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACT 150837 Query 42235 GTCATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || | ||||| | ||||||| ||| |||||||| ||||| || ||||| || Sbjct 150836 CGCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCA 150777 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 |||||| | |||| || || || | || || | ||||||||| || | || Sbjct 150776 ATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGC 150717 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||| | || || ||||| || ||||| || |||||||| |||||||| || | || Sbjct 150716 GAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCT 150657 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGT 42470 || | || || ||||| | | ||| |||| || | ||||||||||| || || | Sbjct 150656 TCAGGTACTTGCACTTCRTTGCTAAAA--TTCATGGCGAGGTTTTCGTTCACAATGCCAT 150599 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCCGGTGTTA 42527 | |||||||||||||| || | ||||| || | |||| || | |||| || | Sbjct 150598 CGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCC---GTGA 150542 Query 42528 ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 ||| | ||| || |||| ||| | | || | || || | ||||| || || | Sbjct 150541 GTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAG 150482 Query 42588 CTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 | || ||||| || ||||| | ||| | || | | ||||| || |||| || || | Sbjct 150481 CCTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAAC 150422 Query 42648 TATTTGGATTT 42658 ||| || ||| Sbjct 150421 GATTGGGGTTT 150411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671105517201400