Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1101 125 1e-23 >seq1101 Length=81374 Score = 125 bits (138), Expect = 1e-23 Identities = 314/467 (67%), Gaps = 19/467 (4%) Strand=Plus/Plus Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||| |||||||| || | || |||| || ||| | || |||||||| ||||| || || Sbjct 7410 GTCATCGTACGCAGAGCGTCTATTGGCGTTTGCCTCGGTGGAGGGCATTTTCTTCTCCGG 7469 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || ||| ||||||||||||| ||||| || || || ||||| || || | | Sbjct 7470 ATCCTTCTGCT-CCATCTTTTGGCTGAAGAAACGTGGTCTTATGCCTGGTCTCAGCTTCT 7528 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 |||||| | || ||| || |||||| | ||| |||||||| ||| ||| | Sbjct 7529 CAAACGAGCTAATTAGTCGTGATGAGGGCATGCACACGGACTTTGCTTGTCTCATGTATT 7588 Query 125587 GCAACTATCTGCGTCCCGAGT-GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACC 125645 ||| ||| | ||| || | || | | ||| | | ||| | Sbjct 7589 CCAAA---CTGGTTAATAAGTTGCCGG---AGAGTCG----GGTGCACGAGATTATTCGG 7638 Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGG 125704 ||||| |||| || || || |||||| | || || || || ||| ||| | ||||| Sbjct 7639 GATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTCACTCCCTGTCGAGC-TCATTGG 7697 Query 125705 CATGAACT--GCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 |||||||| ||| || ||||| ||||||| ||||| ||||| || ||| |||||||| Sbjct 7698 CATGAACTCGGCA--CTCATGTGTCAGTACATTGAGTTCGTGGCTGACCGTTTACTGTAC 7755 Query 125763 GAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA 125822 || || ||||||||| |||||||||| || || || | ||| | || Sbjct 7756 TCACTGGGTGTTGCCAAGATTTATCACGCCAAGAACCCATTCGACTGGATGGATATGATT 7815 Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || ||| | || ||||||||||||||||| ||| || ||||||| Sbjct 7816 TCGCTACAAGGCAAGACCAACTTTTTCGAAAAGCGTGTGGGCGAGTA 7862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741022008091400