Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1101 102 7e-17 seq446 98.7 9e-16 >seq1101 Length=81374 Score = 102 bits (112), Expect = 7e-17 Identities = 304/457 (67%), Gaps = 18/457 (4%) Strand=Plus/Minus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 |||| | ||| ||||| || ||||| || ||||| | ||| |||||||||||||| | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 | | ||||| |||||||| || ||||| || | |||||| || | |||| || || || Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGAT-GGAGCAGAAGGATCCG 7467 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || || || || || || || | |||||||| | | | || | ||||| | | Sbjct 7466 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTC----TGCGTACGA-TG 7412 Query 13322 TTACTC-----TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 |||| || |||||| ||||| || ||||| | ||| || || || Sbjct 7411 ACACTCGCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCG 7352 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttC-CTTACTGTCTAAAATATAAGTATCTATC 13435 | || || || | | || | || || | | ||| ||||| ||||| || Sbjct 7351 TATCAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCT-TGATATATGTATCAAT- 7294 Query 13436 AATAAGC-TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 || ||| ||| | || || |||||||| || ||||| || || || || || || || Sbjct 7293 AAGCAGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCA 7234 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACTA 13553 | ||| || | ||| || |||||| | |||||| | || | ||||||||| || | Sbjct 7233 GCGAGCTTCAGGTACTTGCACTTCGTTGCTAAAAT-TCATGGCGAGGTTTTCGTTCACAA 7175 Query 13554 TCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTT 13590 | || || || || |||||||| ||||| | ||||| Sbjct 7174 TGCCATCGCTGGCTGCAAAAAAGGCAAGCACATGCTT 7138 >seq446 Length=286769 Score = 98.7 bits (108), Expect = 9e-16 Identities = 303/457 (66%), Gaps = 18/457 (4%) Strand=Plus/Minus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 |||| | ||| ||||| || ||||| || ||||| | ||| |||||||||||||| | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 | | ||||| |||||||| || ||||| || | |||||| || | |||| || || || Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGAT-GGAGCAGAAGGATCCG 150897 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || || || || || || || | |||||||| | | | || | ||||| | | Sbjct 150896 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTC----TGCGTACGA-TG 150842 Query 13322 TTACTC-----TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 |||| || |||||| ||||| || ||||| | ||| || || || Sbjct 150841 ACACTCGCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCG 150782 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttC-CTTACTGTCTAAAATATAAGTATCTATC 13435 | || || || | | || | || || | | ||| ||||| ||||| || Sbjct 150781 TATCAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCT-TGATATATGTATCAAT- 150724 Query 13436 AATAAGC-TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 || ||| ||| | || || |||||||| || ||||| || || || || || || || Sbjct 150723 AAGCAGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCA 150664 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACTA 13553 | ||| || | ||| || ||||| | |||||| | || | ||||||||| || | Sbjct 150663 GCGAGCTTCAGGTACTTGCACTTCRTTGCTAAAAT-TCATGGCGAGGTTTTCGTTCACAA 150605 Query 13554 TCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTT 13590 | || || || || |||||||| ||||| | ||||| Sbjct 150604 TGCCATCGCTGGCTGCAAAAAAGGCAAGCACATGCTT 150568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430961310819030