Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq686 105 2e-18 >seq686 Length=3192 Score = 105 bits (116), Expect = 2e-18 Identities = 261/392 (67%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 33052 CGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCA 33111 ||| |||||||| | |||| || | || | ||| |||||||| ||| |||||||| Sbjct 2470 CGGTATCCATTCCGTTTTCAAGCTGCGAAACACGCGCTCCATTGGCGCGTTGTCCCAGCA 2411 Query 33112 GTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTG 33171 ||||| ||||||||||| ||||| | ||| | || ||||||| ||| || || | Sbjct 2410 ATTTCCCCGCCGGCTCATGCTCTGGCGCATCCGATAACGCCACAGCCGCTGGCGAAATAG 2351 Query 33172 CCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACG 33231 | |||| ||| || || ||||| ||| |||| || || || || || || Sbjct 2350 ACGACTCGCATACTGTGACCCTTGATCCGAGTGAAACAGCAGGCCTTGAGGTTTGCCTCG 2291 Query 33232 GGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACAT 33291 || | ||||| |||||||| || || || | ||||||| ||||| Sbjct 2290 TTGCTCGTAAGCCATATCCAGCGCCTTGATAACCAGATCGGCGTCCGGCTTTTCCGACAA 2231 Query 33292 GGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCG 33351 |||||||||||| | || | | || || || || || || ||||| ||| Sbjct 2230 CGCCCAGCCCACTACCCGGCGTGTGCAAAGATCCAGCACGACAGCCAGGTAATGCCA--- 2174 Query 33352 CTTACCC---GTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 33408 || ||| | |||||| ||||| | || |||||||||||||| || || | | || Sbjct 2173 TTTCCCCTGGGCCCAGATGTAGGTGATGTCGCCGCACCACACCTGGTTGGGTGCCGGAAC 2114 Query 33409 GGCGAACTGCC-TTTCAAGGTAGTTAGGGATA 33439 |||||| || |||||| | ||| |||||| Sbjct 2113 ATCGAACTCCCGATTCAAGAT-GTTCGGGATA 2083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124810049007150