Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3521 143 4e-30 seq3406 143 4e-30 >seq3521 Length=28403 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | ||||| || |||||||| || ||||||||||| |||||| Sbjct 17185 GCCAAGCGTCATCGCAAAGTGCTTCGTGACAACATCCAGGGCATCACCAAGCCTGCTATC 17244 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| | || || | | ||||| |||| | Sbjct 17245 CGTCGTCTCGCACGTCGTGGTGGTGTAAAGCGTATTTCCGGTCTCATTTATGAGGAGACT 17304 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | || ||| ||| || || | ||| | | || || ||| Sbjct 17305 CGTGGTGTGCTGAAGGTATTTCTCGAGAATGTCATTCGTGACTCGGTTACGTACACGGAG 17364 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || || || | ||||| |||| || || | || |||||||| Sbjct 17365 CACGCCCGTCGTAAAACCGTGACGGCAATGGACGTCGTATACGCCCTTAAGCGTCAAGGA 17424 Query 16673 CG 16674 || Sbjct 17425 CG 17426 >seq3406 Length=184789 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | ||||| || |||||||| || ||||||||||| |||||| Sbjct 33930 GCCAAGCGTCATCGCAAAGTGCTTCGTGACAACATCCAGGGCATCACCAAGCCTGCTATC 33871 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| | || || | | ||||| |||| | Sbjct 33870 CGTCGTCTCGCACGTCGTGGTGGTGTAAAGCGTATTTCCGGTCTCATTTATGAGGAGACT 33811 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | || ||| ||| || || | ||| | | || || ||| Sbjct 33810 CGTGGTGTGCTGAAGGTATTTCTCGAGAATGTCATTCGTGACTCGGTTACGTACACGGAG 33751 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || || || | ||||| |||| || || | || |||||||| Sbjct 33750 CACGCCCGTCGTAAAACCGTGACGGCAATGGACGTCGTATACGCCCTTAAGCGTCAAGGA 33691 Query 16673 CG 16674 || Sbjct 33690 CG 33689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071529057395