Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1101 201 1e-46 seq446 201 1e-46 seq3828 187 3e-42 >seq1101 Length=81374 Score = 201 bits (222), Expect = 1e-46 Identities = 415/610 (68%), Gaps = 13/610 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||| | ||| || || || ||||| ||||| || | ||||||||| ||||| || | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | |||| || ||||| || ||||| || || |||||||| ||||| ||| ||||| | Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 7466 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 33470 | ||||| || || || || | ||||| || | || | |||| | || || | Sbjct 7465 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 7406 Query 33471 GCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 || | ||| |||||| | ||||||| ||| |||||||| ||||| || ||||| | Sbjct 7405 GCGGGTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTAT 7349 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | |||||| | |||| || || || | || || | ||| ||||| || | | Sbjct 7348 CAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCA 7289 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 | ||| | ||||| ||||| || ||||| || |||||||| |||||||| || | || Sbjct 7288 GCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAG 7229 Query 33650 CCTC-GGTAATCTGTACTTCTGTAC-AAAATCGTTCCGCCAAATTTTCATTCACTATTCC 33707 | || |||| | || ||||| | | ||||| | || | ||||| ||||| || || Sbjct 7228 CTTCAGGTACT-TGCACTTCGTTGCTAAAATTCATG-GCGAGGTTTTCGTTCACAATGCC 7171 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33767 || |||||||||||||| || | ||||| || | |||| ||| | || || Sbjct 7170 ATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAG 7111 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 ||| | ||| || |||| ||| | | || | || || ||||||| || || || Sbjct 7110 TTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGC 7051 Query 33828 CTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 ||| ||||| || ||||| | ||| | ||| | | || || || |||| || || | Sbjct 7050 CTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACG 6991 Query 33888 ATTTGGATTT 33897 ||| || ||| Sbjct 6990 ATTGGGGTTT 6981 >seq446 Length=286769 Score = 201 bits (222), Expect = 1e-46 Identities = 415/610 (68%), Gaps = 13/610 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||| | ||| || || || ||||| ||||| || | ||||||||| ||||| || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | |||| || ||||| || ||||| || || |||||||| ||||| ||| ||||| | Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGG 150896 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 33470 | ||||| || || || || | ||||| || | || | |||| | || || | Sbjct 150895 AGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTC 150836 Query 33471 GCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 || | ||| |||||| | ||||||| ||| |||||||| ||||| || ||||| | Sbjct 150835 GCGGGTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTAT 150779 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | |||||| | |||| || || || | || || | ||| ||||| || | | Sbjct 150778 CAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCA 150719 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 | ||| | ||||| ||||| || ||||| || |||||||| |||||||| || | || Sbjct 150718 GCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAG 150659 Query 33650 CCTC-GGTAATCTGTACTTCTGTAC-AAAATCGTTCCGCCAAATTTTCATTCACTATTCC 33707 | || |||| | || ||||| | | ||||| | || | ||||| ||||| || || Sbjct 150658 CTTCAGGTACT-TGCACTTCRTTGCTAAAATTCATG-GCGAGGTTTTCGTTCACAATGCC 150601 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33767 || |||||||||||||| || | ||||| || | |||| ||| | || || Sbjct 150600 ATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAG 150541 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 ||| | ||| || |||| ||| | | || | || || ||||||| || || || Sbjct 150540 TTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGC 150481 Query 33828 CTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 ||| ||||| || ||||| | ||| | ||| | | || || || |||| || || | Sbjct 150480 CTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACG 150421 Query 33888 ATTTGGATTT 33897 ||| || ||| Sbjct 150420 ATTGGGGTTT 150411 >seq3828 Length=141882 Score = 187 bits (206), Expect = 3e-42 Identities = 1002/1584 (63%), Gaps = 26/1584 (2%) Strand=Plus/Plus Query 62634 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 62693 ||||| ||||| || || || ||||| || || || | || | ||| ||||| | Sbjct 94612 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGTTCGCTTTCAAACGCG 94671 Query 62694 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62753 ||||| | ||||| || || || || | || |||||||||||||| | ||| | || Sbjct 94672 TAATTCATAAGAATGAATGCATCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGG 94731 Query 62754 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62813 | | ||||||| ||| ||| |||| || || || || || | || |||| || || Sbjct 94732 CGCATATTAGACGTTTGAGCCTCTGCAACCGGGTAGTAGTTGACGTCGATAACCTTGTTA 94791 Query 62814 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT 62873 ||||| | | | || || |||||| | ||| || | ||||| || | | Sbjct 94792 AGATTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCAAAGGCACCGTTT 94851 Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 ||||| | | || ||||| |||| || || || || || ||||| | | Sbjct 94852 TCAACAAATTTTGGTAGAGCCACAGACGCCAAGTTGCACACAGCCACTTCATTCGGCGAC 94911 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | ||| | || | |||| ||| | ||||| | ||| || || | ||| || || Sbjct 94912 GTATACTCCATCACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 94971 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 || ||| |||| ||| |||||| |||| || || || || || |||||||| Sbjct 94972 TTGGACTTACGGTTAACCGCGTCCTTAAAAAGCATAAACGGTACGCCCGTCTCAATCTGC 95031 Query 63054 GATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATAGATTTGT-ATCTCCT- 63109 | |||| || ||| ||| | | || | || || ||| | |||| | | | | Sbjct 95032 GCATCTAAGAT-GCTAAACCATAGCTGCT-GTGCATTAATTGT---TTTGCGAGCACGTC 95086 Query 63110 -TTCTCTTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAAT 63167 ||| | |||||| | | | || || ||||||||||||||||| | || | Sbjct 95087 CTTCCCGTTCGTACTTTTCAAA-AAGCGCCTCGAACTCGTCTCCCCAGCACTCGTAAAGA 95145 Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 |||| ||| | ||||| | || ||||| || | | | ||| ||||||||| Sbjct 95146 GCAGGTGCTTCGTTTGGACAAAATAAACTCCACTTGCCATTGGCTTCCACCCGTTTCATA 95205 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || | |||||||| |||||| || |||| || | | || ||| ||| || || Sbjct 95206 AACAAATCAGGAACCCAAAGGGCGTAGAATAAGTCACGCGCTCGGTGTAGCTCATTACCG 95265 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| ||| || || ||| | | | || | ||||||||| |||||||||| Sbjct 95266 TGGTTCTTACGAAGGTCCAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATACA 95325 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | || ||||| ||| || || || | ||||| || |||| ||| | Sbjct 95326 GCAAAAGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAAC 95385 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | |||||| ||||| || ||||| || ||||| || || ||||| || | Sbjct 95386 ACACGCAACATAGGAATGATCCCGTTAGAGGACCCATTAGTGCCACGAATATAACTGTTA 95445 Query 63468 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 |||| || || | | | | |||| || ||||| || ||| || || || ||| Sbjct 95446 GTGGCTCGTATGTTGTGCATACTGAT--GCCAATTCCACCCGCCCACTTGGAAATGCATG 95503 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | ||| |||| || |||||||| ||||| || || |||||| ||| |||| || Sbjct 95504 CACATTGTTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAA 95563 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 | || |||| |||| ||||| |||||| |||||||| || || || | || |||| Sbjct 95564 ARCACGAGGACAGTTGGGGACGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGCG 95623 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63705 |||| | || | ||| | | | ||||||||| | ||| | | |||| | | | Sbjct 95624 TAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGGATATTGCTCTTGT 95683 Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 | || |||| || || ||||| | | || || || | || |||| ||| ||| Sbjct 95684 GGATACCTAACGCAACGCGCATAATTAAYTGTTGCGGCCGCTCCACGA-CTTTACCATTA 95742 Query 63766 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63824 || ||| || ||| || | ||||| || || ||||| | || |||||| Sbjct 95743 ACACGAAAAAGATATCCTTTCTCGAGCGTTTTRAACCCGAAATAATCATACTCAAAGTCC 95802 Query 63825 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTG 63884 || |||| ||||| | || || || | ||| || | | | || || | | | | Sbjct 95803 CGGTCGTRRATAATTGCAGAATTAAGCTCATCTTTGTGCTGCATCACGATCT-CGTAGAC 95861 Query 63885 AT-ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63943 || | | || | ||||| | || |||| || ||||| ||| | || | Sbjct 95862 ATCATCAGCTATGAGCGGAGCAGCAGCTCCTGTTTTCTCATGAACATTYTTGTAAAATAC 95921 Query 63944 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 64003 || || ||||| || | || ||||| | ||||||||||| || ||||| || | Sbjct 95922 TTCGATATTGTCACTGAAGACCTTGTTTGTATTTTTGTGTAGATTCGACACGGCAATACG 95981 Query 64004 GGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGT---ACAAGTGGCTGCTATTTCGGC 64060 || || || ||| | | || ||||| || ||| | |||| ||||| |||| || Sbjct 95982 TGCCGCCAGCTTGGAAAAGTCGGGATGCTGCGTACTCTGGCAAGCGGCTG---TTTCAGC 96038 Query 64061 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||||| ||||| ||| || ||||| || || | || | |||||| Sbjct 96039 AGCCAGCTCGTCCAGTTCCGAAGTGGTTACACCCGGGTACACACCCGCCACGACCTTCTG 96098 Query 64121 AGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACG 64180 | || ||||| | ||| || | ||| | || | || || || | || | || || Sbjct 96099 CGAGATCTTAATGGCATCAATGTAATCTGGATTGAGCCCGTAGCAAAGCTTAGTTATGCG 96158 Query 64181 AGACGTGATTTTATCAAACATGAC 64204 | |||||||| |||||| |||| Sbjct 96159 TGCTGTGATTTTGTCAAACTTGAC 96182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622915935837400