Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3828 403 5e-107 seq1101 114 3e-20 seq446 109 1e-18 seq1113 95.1 3e-14 seq3409 84.2 6e-11 >seq3828 Length=141882 Score = 403 bits (446), Expect = 5e-107 Identities = 1174/1796 (65%), Gaps = 31/1796 (2%) Strand=Plus/Minus Query 363379 GAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGT 363438 ||||||||| |||||| | || ||| | |||||| || || | |||| | |||||| Sbjct 95795 GAGTATGATTATTTCGGGTTYAAAACGCTCGAGAAAGGATATCTTTTTCGTGTTAATGGT 95736 Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 | | || || || ||||| || | | ||||| ||||| | |||||||| Sbjct 95735 AAAGTCGTGGAGCGGCCGCAACARTTAATTATGCGCGTTGCGTTAGGTATCCACAAGAGC 95676 Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCA 363554 || | | || || | || || || || | | || ||| || | || ||||| Sbjct 95675 AATATCCAAGCGGCTTTGGAGACGTACGAGTTGAT--GT-CTCAGAAGTTTTTT-ACGCA 95620 Query 363555 CGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCT 363614 || |||||||| ||| ||||||||||||| | ||| || |||| || || ||| | Sbjct 95619 TGCGACGCCAACGTTGTTTAATGCTGGAACTCCTCGTCCCCAACTGTCCTCGTGYTTTTT 95560 Query 363615 TCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 ||| ||| |||| ||||| || || ||||| | ||||||| | || | ||||| Sbjct 95559 ACTAGCTATGCAGGATGATTCGATTGAAGGTATTTATGACACATTGAAACAATGTGCATG 95500 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG 363734 ||||||||| || || |||||||| | || ||||| | || || ||||| Sbjct 95499 CATTTCCAAGTGGGCGGGTGGAATTGGCATCAGTATGCACAACATACGAGCCACTAACAG 95440 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||| ||||| ||||| || | ||| || ||| | |||| ||| | ||||||||| | Sbjct 95439 TTATATTCGTGGCACTAATGGGTCCTCTAACGGGATCATTCCTATGTTGCGTGTGTTTAA 95380 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | | || || | ||||| ||||| |||||||| || ||||||||| | |||||| | || Sbjct 95379 CGACACAGCCCGATACGTGGACCAAGGTGGAGGTAAACGCAAAGGGTCTTTTGCTGTATA 95320 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAA 363914 | ||||| |||||||| | ||||||||||| || || || || ||| || || Sbjct 95319 CTTGGAGCCGTGGCATGCCGACGTGTTTGAGTTTCTGGACCTTCGTAAGAACCACGGTAA 95260 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 ||| | || || ||||| | ||||| || ||||||||| |||| |||||||| Sbjct 95259 TGAGCTACACCGAGCGCGTGACTTATTCTACGCCCTTTGGGTTCCTGATTTGTTTATGAA 95200 Query 363975 GCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC 364034 || ||||| || | || ||| | ||||| ||| ||||| || | ||||| Sbjct 95199 ACGGGTGGAAGCCAATGGCAAGTGGAGTTTATTTTGTCCAAACGAAGCACCTGCTCTTTA 95140 Query 364035 CGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGC 364094 ||| ||||| ||||| | | || || | |||||||| ||| ||| ||| || Sbjct 95139 CGAGTGCTGGGGAGACGAGTTCGAGGCGCTTTTTGAAAAGTACGAACGGGAAGGACGTGC 95080 Query 364095 TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGAC 364154 ||| || |||||| |||||| ||||||||||| |||| | ||| ||||||||||||| Sbjct 95079 TCGCAAAACAATTAATGCACAGCAGCTATGGTTTAGCATCTTAGATGCGCAGATTGAGAC 95020 Query 364155 AGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 || ||| | |||| | | || || || ||||| ||||||||||||||| | || Sbjct 95019 GGGCGTACCGTTTATGCTTTTTAAGGACGCGGTTAACCGTAAGTCCAACCAGCAGAATCT 94960 Query 364215 TGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 ||| || || | || ||| | || ||| | || || || || | || | || Sbjct 94959 TGGCACGATCCGATCCAGTAACTTGTGCTGTGAGGTGATGGAGTATACGTCGCCGAATGA 94900 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTT 364334 || || || ||| | ||||| | || || || ||||| || | ||| | || Sbjct 94899 AGTGGCTGTGTGCAACTTGGCGTCTGTGGCTCTACCAAAATTTGTTGAAAACGGTGCCTT 94840 Query 364335 TGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTAT 364394 |||| || || | || ||||| || || | | || | ||||| |||||||||| Sbjct 94839 TGACTACAAGAAGCTGTATGATGTGACGAAGGTGGTCACCCGTAATCTTAACAAGGTTAT 94780 Query 364395 CGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCCCGA 364453 |||| || || || || || | || || | | || ||||||||||| || ||||| Sbjct 94779 CGACGTCAACTACTACCCGGTTGCAGAGGCTCAAACG-TCTAATATGCGCCACCGCCCTG 94721 Query 364454 TTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATT 364513 | ||| ||||||| ||||| || || || | || || | | || || ||||| Sbjct 94720 TGGGTATTGGTGTTCAGGGTCTGGCCGATGCATTCATTCTTATGAATTACGCGTTTGAAA 94661 Query 364514 CGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-G 364572 | ||||||| || || ||| | || ||||| || || |||| ||| | || | Sbjct 94660 GCGAACAGGCTCGTGAACTGAACAAGAATATTTTTGAGACCATCTATTATGCTTCGATGG 94601 Query 364573 ACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCT 364632 | | | || ||| ||| | | ||| |||| || | | |||| ||||| Sbjct 94600 AGACATCCATGGAGATTGCCAAGGAAC-TGGGCCCGTACGAAACATTTCAGGGCTCCCCG 94542 Query 364633 CTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA---CGCCATCTGTCCGATGG 364689 | |||| | ||||||||||| | ||| ||||| || | |||| | ||| Sbjct 94541 GCTAGCAAGGGTATCTTCCAGTTTGACATGTGGGGTGTCATTCCGTCCTCTGGTCTTTGG 94482 Query 364690 AACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACA 364749 |||||| | || || || | ||||| |||| |||||||| | | Sbjct 94481 GACTGGGTCGCTCTGAAAAAGAATGTGATTAAGCACGGTATCCGCAACTCTTTGCTAGTG 94422 Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || |||||||| || ||||| ||||| |||||||| || |||||||||| | |||| || Sbjct 94421 GCTCCCATGCCTACTGCTTCGACTGCCCAGATCCTTGGTAACAACGAGTCCATCGAGCCA 94362 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || || | || || || || ||| | || || || || | || || ||| Sbjct 94361 TACACGTCGAACATGTACAATCGACGTGTGCTTGCTGGTGAGTTCACGATCGTGAACAAG 94302 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAG-----AACT 364924 ||||| | || || || ||| | || | || ||| || || | ||| Sbjct 94301 TACCTGATGAAAGAGCTGATCGATCTGGGTATCTG----GAC-GCCCGAGGTCCGTAACC 94247 Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984 | || | || |||| |||||||| || | | | |||| || || | || Sbjct 94246 AGATACTGAACGACCATGGYTCTGTGCAAAAGGTGAAAAGCATTCCGGACCATGTCAARG 94187 Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGC-GAACTC--TCATTGATATGGCGGCCG 365041 | ||||| || || |||||||| || || ||| || | | ||| || |||| | Sbjct 94186 AGAAGTACAAGACAGTGTGGGAAAT---CAAGCAGAAATCCGTGTTAGATCTGTCGGCTG 94130 Query 365042 ATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCT 365101 | || ||||||| |||||| ||||| |||||| ||||| | ||| | | || || Sbjct 94129 ACCGTGGTGCTTATATCTGCCAGAGTCAGTCGCTTAACATTCACATCGCCGACCCGACGA 94070 Query 365102 CCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 | || || ||||||||||| || || | ||||| || || ||||| ||| Sbjct 94069 TCAGTAAACTCACATCCATGCACTTTTATGCTTGGAAGAAGGGGCTAAAGACGGGT 94014 >seq1101 Length=81374 Score = 114 bits (126), Expect = 3e-20 Identities = 287/433 (66%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 22485 CGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTG 22544 ||| || ||||| | || ||||| ||| || ||||||||||| || ||| | || || Sbjct 7419 CGCAGAGCGTCTATTGGCGTTTGCCTCGGTGGAGGGCATTTTCTTCTCCGGATCCTTCTG 7478 Query 22545 TGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTT 22604 | ||||||||||| || ||||||| ||||||| ||||| | || ||||| ||| | Sbjct 7479 CTCCATCTTTTGGCTGAAGAAACGTGGTCTTATGCCTGGTCTCAGCTTCTCAAACGAGCT 7538 Query 22605 AATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATAT 22664 |||||| || |||||||| | || || || ||||| ||| | | ||| || | | Sbjct 7539 AATTAGTCGTGATGAGGGCATGCACACGGACTTTGCTTGTCTCATGTATTCCAAAC---T 7595 Query 22665 CATTCATAAACTTCCATATGAAAC-TGTACTTGATATTATTACAAATGCAGTTGAACTTG 22723 || |||| | || | || | || | || |||||| |||| || | ||| Sbjct 7596 GGTTAATAAGTTGCCGGA-GAGTCGGGTGCACGAGATTATTCGGGATGCTGTGACAATTG 7654 Query 22724 AACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAA 22783 | | ||| | | || | | || || |||||||| || || | | | | Sbjct 7655 AGCACGAGTTTGTGCGTGACTCACTCCCTGTCGAGCTCATTGGCATGAACTCGGCACTCA 7714 Query 22784 TGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGC 22843 || || || ||| | || || || || ||| || | ||||| ||| ||| ||| Sbjct 7715 TGTGTCAGTACATTGAGTTCGTGGCTGACCGTTTACTGTACTCACTGGGTGTTGCCAAGA 7774 Query 22844 ATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCA 22903 |||| ||| | || ||||| || |||||||| | ||||| || |||| ||||||| Sbjct 7775 TTTATCACGCCAAGAACCCATTCGACTGGATGGATATGATTTCGCTACAAGGCAAGACCA 7834 Query 22904 ATTTCTTCGAAAA 22916 | || |||||||| Sbjct 7835 ACTTTTTCGAAAA 7847 >seq446 Length=286769 Score = 109 bits (120), Expect = 1e-18 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 22485 CGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTG 22544 ||| || ||||| | || ||||| ||| || ||||||||||| || ||| | || || Sbjct 150849 CGCAGAGCGTCTATTGGCGTTTGCCTCGGTGGAGGGCATTTTCTTCTCCGGATCCTTCTG 150908 Query 22545 TGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTT 22604 | ||||||||||| || ||||||| ||||||| ||||| | || ||||| ||| | Sbjct 150909 CTCCATCTTTTGGCTGAAGAAACGTGGTCTTATGCCTGGTCTCAGCTTCTCAAACGAGCT 150968 Query 22605 AATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 |||||| || |||||||| | || || || ||||| ||| Sbjct 150969 AATTAGTCGTGATGAGGGCATGCACACGGACTTTGCTTGT 151008 >seq1113 Length=254142 Score = 95.1 bits (104), Expect = 3e-14 Identities = 367/563 (65%), Gaps = 18/563 (3%) Strand=Plus/Minus Query 111369 CTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAA-AATGTAAAAAT 111427 |||||||||||| | || || ||||| | ||| |||||||| ||||| | || Sbjct 13508 CTGTGGTTTATTAGTGGTGACACGAATGCGCACACGCTT-CAGCAAAAGAATGTTCACAT 13450 Query 111428 TTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG-GTCTTGTCGACAA-CGAA 111485 |||||| || ||||| || || || | | || |||| | | || | || ||| Sbjct 13449 TTGGGACGGCAATGGGTCGCGCGAGTACTTGGA--CAGTAGAGGACTGCAGTCACGCGAG 13392 Query 111486 GAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 | || ||||| ||||| ||||| || |||||||||||||| |||||||| | |||| Sbjct 13391 GTGGGAGATCTTGGACCGGTTTATGGTTTTCAATGGCGCCATTTTGGTGCCAAGTACACG 13332 Query 111546 ACCATGCACGACTCATATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATTGATCA 111604 ||||||| | ||| || || || || || | || || || || | Sbjct 13331 GATATGCACGCCGACTATAGCGGCCAAGGCGTGGACCAGCTTGCCGAG-GTGATCCAT-A 13274 Query 111605 AATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 | | | || || || | | || || ||| | || || ||||| || || Sbjct 13273 AGCTCCGCACGAATCCCAATGACCGCCGAATTGTGCTGTCAGCTTGGAATCCGGCTGATC 13214 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGG-- 111721 || | |||||||| | || || || || | | || |||||||| || | ||| Sbjct 13213 TGAATGAAATGGCATTGCCTCCGTGCCACATGTTTTGTCAGTTTTACGT----GGCGGAT 13158 Query 111722 GATG--CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTT 111779 |||| || || ||||| ||||| || || || || |||||||| || || || |||||| Sbjct 13157 GATGAACTGTCGTGCCAGATGTACCAACGCTCGGCCGATATTGGACTAGGCGTGCCGTTT 13098 Query 111780 AATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCG 111839 |||||||| || || || | || || | || |||| || | | || ||| | Sbjct 13097 AATATTGCCAGCTATGCGTTGCTGACGCGTTTGGTCGCGCAAGTGGTAGGACTGAAAGCT 13038 Query 111840 GGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTT 111899 || || ||||| || || ||||| || |||||| | || || ||| | || ||||| Sbjct 13037 GGCGAGTTCATCCATGTCATCGGTGACGCGCATATCTATCTGAATCACGTAGAGCCACTT 12978 Query 111900 AAAACACAGTTGAAGCGCAAACC 111922 | |||||||| ||| | ||| Sbjct 12977 CGACAACAGTTGACGCGTACACC 12955 >seq3409 Length=36251 Score = 84.2 bits (92), Expect = 6e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 145538 TTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGATC 145597 |||||| || || ||||| || | ||| | |||| ||| ||| |||| |||| Sbjct 14478 TTCATCAGACAAACCAGTACCCAGCTTTGTGATCGGTTGGTACATTTCGGTGTCTAGATC 14419 Query 145598 ATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACC--GGTATAC 145655 ||| || || || ||||| || || ||||| || || || || || || || || | Sbjct 14418 ATAGCAAGCGAGGAGATATGCTCCGTAAACACCCGTGCGCTTGCCACGCCCATGGAATGC 14359 Query 145656 CCCGCAATTGGTACAAGATCACAACTA-TCACCCATTCCGGCAAGATAATCCTTTTTAAG 145714 || |||||| || || || || | | ||||| || ||| ||||||||||||| || || Sbjct 14358 ACC--AATTGGAACGAGGTC-CACCGAGTCACCAATGCCGTCAAGATAATCCTTCTTCAG 14302 Query 145715 TTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATA 145750 || | ||| ||| ||||||| || | || ||||| Sbjct 14301 CTTCAACCACTTGTGAGAACGATTAGCAGGCTCATA 14266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303286552639730