Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1101 205 1e-47 seq446 205 1e-47 seq3828 179 5e-40 >seq1101 Length=81374 Score = 205 bits (226), Expect = 1e-47 Identities = 418/611 (68%), Gaps = 15/611 (2%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | ||| || || || ||| | ||||| || | |||||||| ||||| || | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | |||| || ||||| || ||||| || || |||||||| ||||| ||| || ||||| Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 7467 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGG 32826 || |||||||| || || || | ||||| || | || | |||| | || || Sbjct 7466 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACT 7407 Query 32827 CGCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 ||| | ||| |||||| | ||||||| ||| |||||||| ||||| || || || Sbjct 7406 CGCGGGTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTA 7350 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || ||| | |||| || || || | || || | |||||||||||| | Sbjct 7349 TCAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGC 7290 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 || ||| | ||||| ||||| || ||||| || || ||||| ||||||||||| | | Sbjct 7289 AGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGA 7230 Query 33006 GCCTC-GGTAATCTGTACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063 || || |||| | || ||||| | | ||||| | || | ||||| ||||| || | Sbjct 7229 GCTTCAGGTACT-TGCACTTCGTTGCTAAAATTCAT-GGCGAGGTTTTCGTTCACAATGC 7172 Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 33123 | || |||||||||||||| || | ||||| || | |||| ||| | || | Sbjct 7171 CATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGA 7112 Query 33124 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 33183 |||| | ||| || |||| ||| | | || | || || ||||||| || || | Sbjct 7111 GTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAG 7052 Query 33184 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 33243 |||| ||||| || ||||| | ||| | ||| | | ||||| ||||||| || || | Sbjct 7051 CCTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAAC 6992 Query 33244 TATTTGGATTT 33254 ||| || ||| Sbjct 6991 GATTGGGGTTT 6981 >seq446 Length=286769 Score = 205 bits (226), Expect = 1e-47 Identities = 418/611 (68%), Gaps = 15/611 (2%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | ||| || || || ||| | ||||| || | |||||||| ||||| || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | |||| || ||||| || ||||| || || |||||||| ||||| ||| || ||||| Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 150897 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGG 32826 || |||||||| || || || | ||||| || | || | |||| | || || Sbjct 150896 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACT 150837 Query 32827 CGCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 ||| | ||| |||||| | ||||||| ||| |||||||| ||||| || || || Sbjct 150836 CGCGGGTCACA---CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTA 150780 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || ||| | |||| || || || | || || | |||||||||||| | Sbjct 150779 TCAATGGCACGCAGCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGC 150720 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 || ||| | ||||| ||||| || ||||| || || ||||| ||||||||||| | | Sbjct 150719 AGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGA 150660 Query 33006 GCCTC-GGTAATCTGTACTTCTGTAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063 || || |||| | || ||||| | | ||||| | || | ||||| ||||| || | Sbjct 150659 GCTTCAGGTACT-TGCACTTCRTTGCTAAAATTCAT-GGCGAGGTTTTCGTTCACAATGC 150602 Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 33123 | || |||||||||||||| || | ||||| || | |||| ||| | || | Sbjct 150601 CATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGA 150542 Query 33124 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 33183 |||| | ||| || |||| ||| | | || | || || ||||||| || || | Sbjct 150541 GTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAG 150482 Query 33184 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 33243 |||| ||||| || ||||| | ||| | ||| | | ||||| ||||||| || || | Sbjct 150481 CCTCGGCCTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAAC 150422 Query 33244 TATTTGGATTT 33254 ||| || ||| Sbjct 150421 GATTGGGGTTT 150411 >seq3828 Length=141882 Score = 179 bits (198), Expect = 5e-40 Identities = 998/1583 (63%), Gaps = 24/1583 (2%) Strand=Plus/Plus Query 62489 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGA 62548 ||||| ||||| || || || ||||| || || || | || | ||| ||||| | Sbjct 94612 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGTTCGCTTTCAAACGCG 94671 Query 62549 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62608 ||||| | ||||| || || || || | || |||||||||||||| | ||| | || Sbjct 94672 TAATTCATAAGAATGAATGCATCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGG 94731 Query 62609 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62668 | | ||||||| ||| ||| |||| || || || || || | || |||| || || Sbjct 94732 CGCATATTAGACGTTTGAGCCTCTGCAACCGGGTAGTAGTTGACGTCGATAACCTTGTTA 94791 Query 62669 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT 62728 ||||| | | | || || |||||| | ||| || | ||||| || | | Sbjct 94792 AGATTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCAAAGGCACCGTTT 94851 Query 62729 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 ||||| | | || ||||| |||| || || || || || ||||| | | Sbjct 94852 TCAACAAATTTTGGTAGAGCCACAGACGCCAAGTTGCACACAGCCACTTCATTCGGCGAC 94911 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | ||| | || | |||| ||| | ||||| | ||| || || | ||| || || Sbjct 94912 GTATACTCCATCACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 94971 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 || ||| |||| ||| |||||| |||| || || || || || |||||||| Sbjct 94972 TTGGACTTACGGTTAACCGCGTCCTTAAAAAGCATAAACGGTACGCCCGTCTCAATCTGC 95031 Query 62909 GATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATAGATTTGT-ATCTCTT- 62964 | |||| || ||| ||| | | || | || || ||| | |||| | | | | Sbjct 95032 GCATCTAAGAT-GCTAAACCATAGCTGCT-GTGCATTAATTGT---TTTGCGAGCACGTC 95086 Query 62965 -TTCTCTTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 ||| | |||||| | | | || || ||||||||||||||||| | || || Sbjct 95087 CTTCCCGTTCGTACTTTTCAAA-AAGCGCCTCGAACTCGTCTCCCCAGCACTCGTAAAGA 95145 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 |||| ||| | ||||| | || ||||| || | | | ||| ||||||||| Sbjct 95146 GCAGGTGCTTCGTTTGGACAAAATAAACTCCACTTGCCATTGGCTTCCACCCGTTTCATA 95205 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142 || | |||||||| |||||| || |||| || | | || ||| ||| || || Sbjct 95206 AACAAATCAGGAACCCAAAGGGCGTAGAATAAGTCACGCGCTCGGTGTAGCTCATTACCG 95265 Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202 ||||| ||| || || ||| | | | || | ||||||||| |||||||||| Sbjct 95266 TGGTTCTTACGAAGGTCCAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATACA 95325 Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262 || | | || ||||| ||| || || || | ||||| || |||| ||| | Sbjct 95326 GCAAAAGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAAC 95385 Query 63263 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCA 63322 || | |||||| ||||| || || || || | ||||| || || ||||| || | Sbjct 95386 ACACGCAACATAGGAATGATCCCGTTAGAGGACCCATTAGTGCCACGAATATAACTGTTA 95445 Query 63323 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63380 |||| || || | | | | |||| || ||||| || ||| || || || ||| Sbjct 95446 GTGGCTCGTATGTTGTGCATACTGAT--GCCAATTCCACCCGCCCACTTGGAAATGCATG 95503 Query 63381 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 63440 | ||| |||| || || ||||| || || || || ||||||| ||| |||| || Sbjct 95504 CACATTGTTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAA 95563 Query 63441 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAG 63500 | || |||| |||| ||||| |||||| |||||||| || || || | || || | Sbjct 95564 ARCACGAGGACAGTTGGGGACGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGCG 95623 Query 63501 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63560 |||| | || | ||| | | | ||||||||| | ||| | | |||| | | | Sbjct 95624 TAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGGATATTGCTCTTGT 95683 Query 63561 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63620 | || |||| || || ||||| | | || || || | || |||| ||| ||| Sbjct 95684 GGATACCTAACGCAACGCGCATAATTAAYTGTTGCGGCCGCTCCACGA-CTTTACCATTA 95742 Query 63621 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 || ||| || ||| || | ||||| || || ||||| | || |||||| Sbjct 95743 ACACGAAAAAGATATCCTTTCTCGAGCGTTTTRAACCCGAAATAATCATACTCAAAGTCC 95802 Query 63680 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTA 63739 || |||| ||||| | || || || | ||| || | | | || | || | | Sbjct 95803 CGGTCGTRRATAATTGCAGAATTAAGCTCATCTTTGTGCTGCATCACGATCTCGTAGACA 95862 Query 63740 ATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCC 63799 | | || | ||| | || |||| || |||| ||| | || | Sbjct 95863 TCATCAGCTATGAGCGGAGCAGCAGCTCCTGTTTTCTCATGAACATTYTTGTAAAATACT 95922 Query 63800 TCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 63859 || || ||||| || | || ||||| | |||||||||||| || ||||| || | Sbjct 95923 TCGATATTGTCACTGAAGACCTTGTTTGTATTTTTGTGTAGATTCGACACGGCAATACGT 95982 Query 63860 GCGGCTAGAATGGCATAATCCGGATGTTGTGTAGT---ACAAGTGGCTGCTATTTCGGCT 63916 || || || ||| | | || ||||| || ||| | |||| ||||| |||| || Sbjct 95983 GCCGCCAGCTTGGAAAAGTCGGGATGCTGCGTACTCTGGCAAGCGGCTG---TTTCAGCA 96039 Query 63917 GCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATA 63976 ||||| ||||| ||| || |||||||| || | || | |||||| Sbjct 96040 GCCAGCTCGTCCAGTTCCGAAGTGGTTACACCCGGGTACACACCCGCCACGACCTTCTGC 96099 Query 63977 GCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGA 64036 | || ||||| | ||| || | ||| | || | || || || | || | || || Sbjct 96100 GAGATCTTAATGGCATCAATGTAATCTGGATTGAGCCCGTAGCAAAGCTTAGTTATGCGT 96159 Query 64037 GATGTGATTTTATCAAACATGAC 64059 | ||||||||| |||||| |||| Sbjct 96160 GCTGTGATTTTGTCAAACTTGAC 96182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633600199594000