Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3639 132 1e-25 seq3526 132 1e-25 seq446 100 6e-16 seq1347 96.9 7e-15 >seq3639 Length=157838 Score = 132 bits (146), Expect = 1e-25 Identities = 179/249 (72%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||| |||| || |||||||||||||||||| ||| || | || ||||| || | | Sbjct 102966 GTCGGTACTCTTTCTGGTGGTTGGAAGATGAAGTTGGAGCTGGCCCGTGCCATGCTGCAG 102907 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || || | || || |||||||| || |||||| ||||| || ||||| || Sbjct 102906 AAGGCTGACATCTTGCTTCTRGATGAGCCGACGAACCACTTGGACGTCAARAACGTTGCG 102847 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| || | |||| |||||| | || | || || || |||||| Sbjct 102846 TGGCTGGAGAACTACCTGACAGGCCTGACGAATGTGACGTCGATTATGGTGTCGCACGAC 102787 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAG 279932 ||||||||||| || | || ||| | ||| |||||||| ||| | || |||||| Sbjct 102786 TCTGGCTTCCTTGACACGGTCTGCACGAACATTATTCACTACGAGACCCGCAAGCTGAAG 102727 Query 279933 CTCTCCAAG 279941 ||| |||| Sbjct 102726 ATCTACAAG 102718 Score = 104 bits (114), Expect = 5e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || |||| ||| |||| ||||| ||||| |||||||| || || || || | |||||| Sbjct 102498 CGTATTGCTGTGCTTGGCCCCAACGGTGCCGGTAAGTCGACGCTGATTAAGATGCTGACT 102439 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTA 280282 || || || | || ||| || | | | ||||| || || |||||| | || || Sbjct 102438 GGTGAAGTTGAGCCGAC-GAGTGGACAGGTGTGGAAACACCCTTCCATGCGTTTTGCCTA 102380 Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342 ||| || ||||||||||| |||||||| ||| || || ||| ||| | || || || Sbjct 102379 CGTGGCACAGCACGCTTTTCACCACATTGAGTCGCATCTCGACGAGACAGCCAATCAGTA 102320 Query 280343 CATTCAGTGGCGCT 280356 |||||||||||||| Sbjct 102319 CATTCAGTGGCGCT 102306 Score = 93.3 bits (102), Expect = 9e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 279361 ACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACA 279420 ||||||| |||||||| || || ||||| | ||||||| | ||| | || || | Sbjct 103298 ACTGTGAGTTCTCGCTTGCTTACGGTGGTATGATTCTGTTGAACAACGCTCGTCTTCGCC 103239 Query 279421 TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAA 279480 | |||||||| |||| || ||||| |||||||| || |||||| || || | Sbjct 103238 TTAAGCGTGGTCACCGTTACGGTCTGTGTGGTCCCAACGGTTGTGGTAAGTCGACGCTGA 103179 Query 279481 TGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTA-ACGCATCTGAGGTAAGGACA 279539 ||||||||||| | ||||| ||||| || || || || | ||| | || | | ||| Sbjct 103178 TGCGCGCCATTTCCAACGGCCAGCTAGAGGGCTTCCCCAGCCGCGAC-GAACTGAAGACT 103120 Query 279540 GTGTATGTAGAGCAC 279554 |||| |||||||||| Sbjct 103119 GTGTTTGTAGAGCAC 103105 >seq3526 Length=28024 Score = 132 bits (146), Expect = 1e-25 Identities = 179/249 (72%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||| |||| || |||||||||||||||||| ||| || | || ||||| || | | Sbjct 16614 GTCGGTACTCTTTCTGGTGGTTGGAAGATGAAGTTGGAGCTGGCCCGTGCCATGCTGCAG 16555 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || || | || || |||||||| || |||||| ||||| || ||||| || Sbjct 16554 AAGGCTGACATCTTGCTTCTGGATGAGCCGACGAACCACTTGGACGTCAAGAACGTTGCG 16495 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| || | |||| |||||| | || | || || || |||||| Sbjct 16494 TGGCTGGAGAACTACCTGACAGGCCTGACGAATGTGACGTCGATTATGGTGTCGCACGAC 16435 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAG 279932 ||||||||||| || | || ||| | ||| |||||||| ||| | || |||||| Sbjct 16434 TCTGGCTTCCTTGACACGGTCTGCACGAACATTATTCACTACGAGACCCGCAAGCTGAAG 16375 Query 279933 CTCTCCAAG 279941 ||| |||| Sbjct 16374 ATCTACAAG 16366 Score = 104 bits (114), Expect = 5e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || |||| ||| |||| ||||| ||||| |||||||| || || || || | |||||| Sbjct 16146 CGTATTGCTGTGCTTGGCCCCAACGGTGCCGGTAAGTCGACGCTGATTAAGATGCTGACT 16087 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTA 280282 || || || | || ||| || | | | ||||| || || |||||| | || || Sbjct 16086 GGTGAAGTTGAGCCGAC-GAGTGGACAGGTGTGGAAACACCCTTCCATGCGTTTTGCCTA 16028 Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342 ||| || ||||||||||| |||||||| ||| || || ||| ||| | || || || Sbjct 16027 CGTGGCACAGCACGCTTTTCACCACATTGAGTCGCATCTCGACGAGACAGCCAATCAGTA 15968 Query 280343 CATTCAGTGGCGCT 280356 |||||||||||||| Sbjct 15967 CATTCAGTGGCGCT 15954 Score = 93.3 bits (102), Expect = 9e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 279361 ACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACA 279420 ||||||| |||||||| || || ||||| | ||||||| | ||| | || || | Sbjct 16946 ACTGTGAGTTCTCGCTTGCTTACGGTGGTATGATTCTGTTGAACAACGCTCGTCTTCGCC 16887 Query 279421 TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAA 279480 | |||||||| |||| || ||||| |||||||| || |||||| || || | Sbjct 16886 TTAAGCGTGGTCACCGTTACGGTCTGTGTGGTCCCAACGGTTGTGGTAAGTCGACGCTGA 16827 Query 279481 TGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTA-ACGCATCTGAGGTAAGGACA 279539 ||||||||||| | ||||| ||||| || || || || | ||| | || | | ||| Sbjct 16826 TGCGCGCCATTTCCAACGGCCAGCTAGAGGGCTTCCCCAGCCGCGAC-GAACTGAAGACT 16768 Query 279540 GTGTATGTAGAGCAC 279554 |||| |||||||||| Sbjct 16767 GTGTTTGTAGAGCAC 16753 >seq446 Length=286769 Score = 100 bits (110), Expect = 6e-16 Identities = 501/787 (64%), Gaps = 20/787 (3%) Strand=Plus/Minus Query 251599 TCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAA 251657 ||||| ||||||| ||||| |||| | || ||||| | || |||| ||| | Sbjct 151238 TCCATCCAGTCGAATGGGTTCTTGGCGTGATAAATCTTGGCAACACCCAGTGAGTAC-AG 151180 Query 251658 GATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA- 251716 | ||||| ||||| ||||| | ||||| | ||| ||| | |||||||||||||| | Sbjct 151179 TAAACGGTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATGAG 151120 Query 251717 TACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAA 251776 |||| ||| | || |||| | || || | || | | || || ||| | || Sbjct 151119 CTCGAC-AGGGAGTGAGTCACGCACAAACTCGTGCTCRATTGTCACAGCATCCCGAATAA 151061 Query 251777 TTGCCTTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAA 251836 | | | |||| | | | || ||| || |||| || || |||| ||| ||| Sbjct 151060 TCTCGTGCACCCGACTCTCCGGCAACTTATTAACCAGTTTGGAATACATGAGACAAGCAA 151001 Query 251837 ACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCA 251896 | | ||||| ||||| || ||||| || | |||||| || | | || ||||||| Sbjct 151000 AGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCAGGCA 150941 Query 251897 TCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCT 251956 | | ||||| ||| | ||||| ||||| | ||| |||||||| ||||| | | |||| Sbjct 150940 TAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAATGCCCT 150881 Query 251957 CGACACACACCCATGCAACAAGGCGCTCAGCAAACGACTTG----TCCTGCGACA-AGAA 252011 | || | | | || | || ||||| || |||| || || | | || | | Sbjct 150880 CCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGA--TGACACTCGCGGGTCACACCA 150823 Query 252012 CTTCTGTGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAG 252071 ||| ||||||| || |||||| || || || || || || ||| | || Sbjct 150822 CTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACGCAGCAG 150763 Query 252072 AGAGTTCCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGA 252131 | || | ||| || | | || ||| | ||||| || || || || | |||||| Sbjct 150762 ATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCGAATAGACCTCCGA 150703 Query 252132 ATGGATGGATTC---GTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGT 252188 || || |||| | | | ||||| | | ||||| || || ||| | Sbjct 150702 GTGAAT--ATTCTCAATCGCA-ATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTACTTG 150646 Query 252189 GACTTCCGTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAA 252248 ||||| || ||| || | || | ||| || |||| |||||||||||| ||||||| Sbjct 150645 CACTTCRTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCAAA 150586 Query 252249 GAAGCCAAGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 ||| |||| | ||| | ||| || || |||| ||| |||| ||||| |||||| Sbjct 150585 AAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTTGTC---CCAGTC 150529 Query 252309 GGCAATGTCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTT 252368 | || || ||| | || || | |||||||| | | | | |||||||| Sbjct 150528 CTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCTCGGCCTTCTT 150469 Query 252369 GTACATT 252375 ||||||| Sbjct 150468 GTACATT 150462 >seq1347 Length=72235 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 66344 AGCCCGTCTAGCTCAGTCGGTAGAGCGCATGACTCTTAATCTTGTGGTCGTGGGTTCGAG 66285 Query 142563 CCCCAC 142568 |||||| Sbjct 66284 CCCCAC 66279 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 66643 AGCCCGTCTAGCTCAGTCGGTAGAGCGCATGACTCTTAATCTTGTGGTCGTGGGTTCGAG 66584 Query 142563 CCCCAC 142568 |||||| Sbjct 66583 CCCCAC 66578 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||| ||||| |||||||| |||| |||||||||||||||||| Sbjct 67444 GCCCGTCTAGCTCAGTCGGTAAAGCGCAAGACTCTTTATCTTGTGGTCGTGGGTTCGAGC 67385 Query 142564 CCC 142566 ||| Sbjct 67384 CCC 67382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027783925826615