Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1101 183 6e-41 seq446 168 1e-36 >seq1101 Length=81374 Score = 183 bits (202), Expect = 6e-41 Identities = 560/849 (66%), Gaps = 35/849 (4%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGA- 42367 |||||||||||||| || || |||||| ||||||||| | ||||||| | | || Sbjct 7033 ATGTACAAGAAGGCCGAGGCTTCGTTCTGGACAGCCGAGGAGCTCGACCTGGTCCACGAT 7092 Query 42368 --CACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 || || | ||||| ||| | || || ||| |||| | || | | || Sbjct 7093 CTCAAGGAC---TGGGACAAACTCACGGACAATGAACGCCATTTCGTGAAGCATGTGCTT 7149 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 ||||| || || ||| || ||||| || || || ||||| |||| | || | || Sbjct 7150 GCCTTTTTTGCAGCCAGCGATGGCATTGTGAACGAAAACCTCGCCATGAATTTTAGCAAC 7209 Query 42486 GAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || ||||| |||| | || || |||||||||||||| || ||||| || || ||||| | Sbjct 7210 GAAGTGCAAGTACCT-GAAGCTCGCTGCTTCTACGGGTTTCAGATTGCGATTGAGAATAT 7268 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||||| || | ||||| | | || || ||| | || | | ||| Sbjct 7269 TCACTCGGAGGTCTATTC---GCTGCTTATTGATACATATATCAAGAATGCTGGAGAGAA 7325 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || ||| | ||||| || ||||| || || |||| ||||| || | ||||| Sbjct 7326 GGACCATCTGCTGCGTGCCATTGATACGATACCATGTGTCAAAAAGAAAGCCAATTGGGC 7385 Query 42662 GCTCAACTGGATCGAGAGTCCCGA--CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 ||||| ||| | || | ||| || ||| || ||| | || | || ||| || Sbjct 7386 ACTCAAGTGG--TGTGACCCGCGAGTGTCATCGTACGCAGAGCGTCTATTGGCGTTTGCC 7443 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 | || |||||||| |||||||| || ||||| ||||||||| ||||| ||| | | | Sbjct 7444 TCGGTGGAGGGCATTTTCTTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAG-AAACG 7502 Query 42780 GTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 ||| ||||| || |||| |||||| ||||| || || || | || ||||| |||| Sbjct 7503 TGGTCTTATGCCTGGTCTCAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGCA 7562 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCG 42898 | ||||||||| || ||| ||| || | | || | ||| || || || Sbjct 7563 CACGGACTTTGCTTGTCTCATGTATTC---CAAACTGGTTAATAAGTTGCCGGAGAGTCG 7619 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT----CCTCACGCAGT 42954 ||| | | || || ||| || ||| || ||| | ||||| | | || || | Sbjct 7620 GGTGCACGAGATTATTCGGGATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTCACT 7679 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 | ||| || | || | ||||||||| | |||||||| ||||||| ||| || Sbjct 7680 CCCTG-TCGAG---CTCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCG 7735 Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCC--GTGCCC 43072 | || |||| | | |||| | ||||| | ||| | | |||||| | ||| Sbjct 7736 TGGCTGACCGTTTACTGTACTCACTGGGTGT-TGCC-AAGATTTATCACGCCAAGAACCC 7793 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 ||||||| ||||| | || ||| | | |||||||||||||||||||| ||||| || Sbjct 7794 ATTCGACTGGATGGATATGATTTCGCTACAAGGCAAGACCAACTTTTTCGAAAAGCGTGT 7853 Query 43133 CGCCGACTA 43141 | ||| || Sbjct 7854 GGGCGAGTA 7862 >seq446 Length=286769 Score = 168 bits (186), Expect = 1e-36 Identities = 381/563 (68%), Gaps = 20/563 (4%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGA- 42367 |||||||||||||| || || |||||| ||||||||| | ||||||| | | || Sbjct 150463 ATGTACAAGAAGGCCGAGGCTTCGTTCTGGACAGCCGAGGAGCTCGACCTGGTCCACGAT 150522 Query 42368 --CACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 || || | ||||| ||| | || || ||| |||| | || | | || Sbjct 150523 CTCAAGGAC---TGGGACAAACTCACGGACAATGAACGCCATTTCGTGAAGCATGTGCTT 150579 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 ||||| || || ||| || ||||| || || || ||||| |||| | || | || Sbjct 150580 GCCTTTTTTGCAGCCAGCGATGGCATTGTGAACGAAAACCTCGCCATGAATTTTAGCAAY 150639 Query 42486 GAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || ||||| |||| | || || |||||||||||||| || ||||| || || ||||| | Sbjct 150640 GAAGTGCAAGTACCT-GAAGCTCGCTGCTTCTACGGGTTTCAGATTGCGATTGAGAATAT 150698 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||||| || | ||||| | | || || ||| | || | | ||| Sbjct 150699 TCACTCGGAGGTCTATTC---GCTGCTTATTGATACATATATCAAGAATGCTGGAGAGAA 150755 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || ||| | ||||| || ||||| || || |||| ||||| || | ||||| Sbjct 150756 GGACCATCTGCTGCGTGCCATTGATACGATACCATGTGTCAAAAAGAAAGCCAATTGGGC 150815 Query 42662 GCTCAACTGGATCGAGAGTCCCGA--CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 ||||| ||| | || | ||| || ||| || ||| | || | || ||| || Sbjct 150816 ACTCAAGTGG--TGTGACCCGCGAGTGTCATCGTACGCAGAGCGTCTATTGGCGTTTGCC 150873 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 | || |||||||| |||||||| || ||||| ||||||||| ||||| ||| | | | Sbjct 150874 TCGGTGGAGGGCATTTTCTTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAG-AAACG 150932 Query 42780 GTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 ||| ||||| || |||| |||||| ||||| || || || | || ||||| |||| Sbjct 150933 TGGTCTTATGCCTGGTCTCAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGCA 150992 Query 42839 TAGGGACTTTGCCTGCCTCCTGT 42861 | ||||||||| || ||| ||| Sbjct 150993 CACGGACTTTGCTTGTCTCATGT 151015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944291805976400