Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq2439 84.2 7e-12 >seq2439 Length=1004 Score = 84.2 bits (92), Expect = 7e-12 Identities = 424/671 (63%), Gaps = 15/671 (2%) Strand=Plus/Minus Query 17481 ATCCAGAATACGCAACTGACTGCGGTGCGCGTGCGCTTCGGTGTGCCGGCGCTACAGCGT 17540 ||| | ||||| ||||| | || ||||||||||| || | ||||||||| ||| | Sbjct 662 ATCAACAATACTCAACTTTCCGCTGTGCGCGTGCGTTTTGCCTGGCCGGCGCTTCAGTCT 603 Query 17541 CAGGACACGTCGAACGGCAATATCACGGGCTATCGCGTCGACTATGCGATCGACTTGTCG 17600 ||| | || |||||| |||| || || || |||| || | | || || | Sbjct 602 GTGGATGC--CGG-CGGCAACATCAACGGGTACCGGATCGAATACAAGGTTGAGCTGGCC 546 Query 17601 GTCGACGGCGGGTCGTATGCGCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCG 17660 ||| || || | ||| |||||| || || || ||||||||||||| || Sbjct 545 AGCGATGGTGGTGCCTATCAGCAGGTTTTGAGCGAGGCTGTCGACGGCAAGACCACCAGC 486 Query 17661 CTCTATGAGCGCTCGCATCGGATCGAGCTGCCGCGCGCAAAAAATGGTTGGTTGATCCGC 17720 | || |||||| ||| || ||||| | || || | | || |||||||| ||| Sbjct 485 GTGTACGAGCGCACGCGCCGTATCGATTTACCCAAAGCCACGACCGGCTGGTTGATGCGC 426 Query 17721 GTGCGCCGCATCACGCCGAACGCGCACACGGCGACGATCGCCGACGCGATCAACATCGAG 17780 | ||||||||| || ||| | ||| | ||| | ||| | || | |||| Sbjct 425 ATCACCCGCATCACACCAAACCAGAACAACAACAAAATCTCGGACACCATGCAGATCGCC 366 Query 17781 GCGATTACCGAGATCATCGATCGGAAGCTCCGCTATCCGATGACGGCGCTTGTCGGTATG 17840 | |||||||| | ||||| |||| ||||||| |||| |||||||| || || Sbjct 365 GGATTTACCGAGGTGATCGACGCGAAGATCCGCTACCCGAACACGGCGCTGCTCTACATC 306 Query 17841 ACGTTCGACGCACGTTC-GTTCTCGAGCGTGCCAGTGCGTTCGTATCACGTGCG-----A 17894 ||| ||| || | |||| || | | || |||| | || | | Sbjct 305 GAGTTTTCCGC-CGAGCAGTTCCGCAGTATCC-----CGGCCGTAACGGTTGAGACCAAA 252 Query 17895 GGGATGATCTTCCGAGTCCCGACAAACTACGACCCGGAGACGCGTACGTACTCGGGTACA 17954 || || | | || |||| ||||||||||| | | |||| ||||| || Sbjct 251 TTGAAGAAGATGCAGGTGCCGAGCAACTACGACCCTGTGTCGCGCTCGTACAGTGGCGTT 192 Query 17955 TGGGACGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTA 18014 |||||||| || || ||| || ||||| |||| || | ||| | ||||| | | Sbjct 191 TGGGACGGCACCTTTAAGCAGGCCTGGACCGACAACCCTGTCTGGATGACCTACGACATT 132 Query 18015 CTTCTCGACAAGCTCAACGGATTGGGTGACCGTGTCGATGCTTCGATGGTCGATAAGTGG 18074 ||| | | | || |||| || || | | | |||||| || || ||| Sbjct 131 ACCATCGCTGACCGCTTTGGCCTGGGCCGTCGCATCAAGCCGTGGATGGTGGACAAATGG 72 Query 18075 GCGCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAG 18134 | ||||||| || ||| ||||||||| | | ||| | ||||||||||| ||| || Sbjct 71 GAGCTGTACCGGATTTCGCAATACTGCGACCAGTTGGTGCCGGACGGGAAGGGTGGCCAG 12 Query 18135 GAGCCGCGCTT 18145 ||||||||||| Sbjct 11 GAGCCGCGCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155627779605480