Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1101 125 2e-23 seq3639 98.7 2e-15 seq3526 98.7 2e-15 >seq1101 Length=81374 Score = 125 bits (138), Expect = 2e-23 Identities = 277/412 (67%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || || || ||| | || ||||| |||||| |||||||||||||| ||| ||| Sbjct 7447 GTGGAGGGCATTTTCTTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAGAAACGTGGT 7506 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 | |||||||| ||| | | || |||||| | || ||||| || |||||| | ||| Sbjct 7507 CTTATGCCTGGTCTCAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGCACACG 7566 Query 243439 CAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACC----ATTCGAAACGGT 243494 | || | | || |||||||| || || || ||| | || | ||| ||| Sbjct 7567 GACTTTGCTTGTCTCATGTATTCCAAACTGGTTAATAAGTTGCCGGAGAGTCG----GGT 7622 Query 243495 CAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCC 243554 | | || || || || || || || | || || | | ||| | | ||| Sbjct 7623 GCACGAGATTATTCGGGATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTC-ACTCC 7681 Query 243555 ATGCCG-GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613 || || ||| |||||||||||||| | ||||||| | |||||||| || ||||| || | Sbjct 7682 CTGTCGAGCTCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTGGCTG 7741 Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673 |||| | | | | || ||| || || | || || |||||||||| || | || Sbjct 7742 ACCGTTTACTGTACTCACTGGGTGTTGCCAAGATTTATCACGCCAAGAACCCATTCGACT 7801 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | |||||||| ||||| || || ||||| |||||||||||||| Sbjct 7802 GGATGGATATGATTTCGCTACAAGGCAAGACCAACTTTTTCGAAAAGCGTGT 7853 >seq3639 Length=157838 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||| ||||| || | ||||| || || ||||| |||| |||| ||| ||| Sbjct 102284 TCCTTGTCCTCACCAGACTGGAAGCGCCACTGAATGTACTGATTGGCTGTCTCGTCGAGA 102343 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || ||| |||||||| ||||| |||||||||||||| |||| |||||| || || Sbjct 102344 TGCGACTCAATGTGGTGAAAAGCGTGCTGTGCCACGTAGGCAAAACGCATGGAAGGGTGT 102403 Query 333435 TTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTT 333494 ||||| || ||| | || | || | || || || |||| |||||| || || Sbjct 102404 TTCCACACCTGTCCACTCGTCGGCTCAACTTCACCAGTCAGCATCTTAATCAGCGTCGAC 102463 Query 333495 TTTCCCGCACCATTTTCGCCTACCACACCAAT 333526 || || ||||| || ||| | |||| |||| Sbjct 102464 TTACCGGCACCGTTGGGGCCAAGCACAGCAAT 102495 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || ||||| ||||| ||| ||||||||||| || || ||||| || Sbjct 103141 GGGGAAGCCCTCTAGCTGGCCGTTGGAAATGGCGCGCATCAGCGTCGACTTACCACAACC 103200 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || |||||||||||||| |||| |||||||| || | || | ||||||| Sbjct 103201 GTTGGGACCACACAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAA 103260 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 334336 ||||| | ||||| || || || || || ||||| Sbjct 103261 CAGAATCATACCACCGTAAGCAAGCGAGAACTCACA 103296 >seq3526 Length=28024 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||| ||||| || | ||||| || || ||||| |||| |||| ||| ||| Sbjct 15932 TCCTTGTCCTCACCAGACTGGAAGCGCCACTGAATGTACTGATTGGCTGTCTCGTCGAGA 15991 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || ||| |||||||| ||||| |||||||||||||| |||| |||||| || || Sbjct 15992 TGCGACTCAATGTGGTGAAAAGCGTGCTGTGCCACGTAGGCAAAACGCATGGAAGGGTGT 16051 Query 333435 TTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTT 333494 ||||| || ||| | || | || | || || || |||| |||||| || || Sbjct 16052 TTCCACACCTGTCCACTCGTCGGCTCAACTTCACCAGTCAGCATCTTAATCAGCGTCGAC 16111 Query 333495 TTTCCCGCACCATTTTCGCCTACCACACCAAT 333526 || || ||||| || ||| | |||| |||| Sbjct 16112 TTACCGGCACCGTTGGGGCCAAGCACAGCAAT 16143 Score = 96.9 bits (106), Expect = 8e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || ||||| ||||| ||| ||||||||||| || || ||||| || Sbjct 16789 GGGGAAGCCCTCTAGCTGGCCGTTGGAAATGGCGCGCATCAGCGTCGACTTACCACAACC 16848 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || |||||||||||||| |||| |||||||| || | || | ||||||| Sbjct 16849 GTTGGGACCACACAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAA 16908 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 334336 ||||| | ||||| || || || || || ||||| Sbjct 16909 CAGAATCATACCACCGTAAGCAAGCGAGAACTCACA 16944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102823265440250