Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3828 143 3e-29 >seq3828 Length=141882 Score = 143 bits (158), Expect = 3e-29 Identities = 244/354 (69%), Gaps = 0/354 (0%) Strand=Plus/Minus Query 94003 TGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCC 94062 ||||| ||| || || | ||||| ||||| || |||||| | ||| || |||| ||| Sbjct 95507 TGTGCATGCATTTCCAAGTGGGCGGGTGGAATTGGCATCAGTATGCACAACATACGAGCC 95448 Query 94063 AGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGG 94122 | || || || || || ||||| |||| ||||| || | |||||| | || Sbjct 95447 ACTAACAGTTATATTCGTGGCACTAATGGGTCCTCTAACGGGATCATTCCTATGTTGCGT 95388 Query 94123 GTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTC 94182 || || ||| || | || || ||||||||||| ||||| || | | || || ||||| Sbjct 95387 GTGTTTAACGACACAGCCCGATACGTGGACCAAGGTGGAGGTAAACGCAAAGGGTCTTTT 95328 Query 94183 GCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAAC 94242 || || || | ||||| ||||| || |||||| | || | ||||| || |||||| Sbjct 95327 GCTGTATACTTGGAGCCGTGGCATGCCGACGTGTTTGAGTTTCTGGACCTTCGTAAGAAC 95268 Query 94243 CACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTT 94302 ||||| || || || | | || | ||| | |||||||| || ||||| || || | Sbjct 95267 CACGGTAATGAGCTACACCGAGCGCGTGACTTATTCTACGCCCTTTGGGTTCCTGATTTG 95208 Query 94303 TTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAA 94356 ||||||||||| || || || | |||||| | |||||||| || ||| Sbjct 95207 TTTATGAAACGGGTGGAAGCCAATGGCAAGTGGAGTTTATTTTGTCCAAACGAA 95154 Score = 127 bits (140), Expect = 2e-24 Identities = 376/584 (64%), Gaps = 15/584 (3%) Strand=Plus/Minus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCC---CTCGGGTCTGTACGACTGGG 95050 |||| || || ||||| ||| | |||||||| | || ||| ||||| | ||||||| Sbjct 94534 AGGGTATCTTCCAGTTTGACATGTGGGGTGTCATTCCGTCCTCTGGTCTTTGGGACTGGG 94475 Query 95051 AAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 ||||| |||| || || |||||| | ||| | |||| ||||| |||| Sbjct 94474 TCGCTCTGAAAAAGAATGTGATTAAGCACGGTATCCGCAACTCTTTGCTAGTGGCTCCCA 94415 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 |||| || || || || || ||||||||||| ||||||||||| |||| || | ||| | Sbjct 94414 TGCCTACTGCTTCGACTGCCCAGATCCTTGGTAACAACGAGTCCATCGAGCCATACACGT 94355 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 | ||| ||||||| | || ||||| || || || ||| | || | |||||| |||| Sbjct 94354 CGAACATGTACAATCGACGTGTGCTTGCTGGTGAGTTCACGATCGTGAACAAGTACCTGA 94295 Query 95231 TACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCG 95290 | || |||| ||||||| | ||| | ||||| ||||| | || || Sbjct 94294 TGAAAGAGCTGATCGATCTGGGTATCTGGACGCCCGAGGTCCGTAACCAGATACTGAACG 94235 Query 95291 CCAACGGCTCCGTCCAGAACATCCCGCAA---ATACCGGAGGACATCAAGGCGCTCTACA 95347 | | || || || || || | | || || ||||| | |||| | | |||| Sbjct 94234 ACCATGGYTCTGTGCAAAAGGT---GAAAAGCATTCCGGACCATGTCAARGAGAAGTACA 94178 Query 95348 AGACCGTGTGGGAGATCCCGCAG---CGCGTGATACTCGACCACGCGGCCGCCCGCGGGC 95404 |||| |||||||| ||| |||| |||| || || | |||| | ||| || Sbjct 94177 AGACAGTGTGGGAAATCAAGCAGAAATCCGTGTTA---GATCTGTCGGCTGACCGTGGTG 94121 Query 95405 CCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAA 95464 | | ||||||||||| || ||||| || | | | ||| Sbjct 94120 CTTATATCTGCCAGAGTCAGTCGCTTAACATTCACATCGCCGACCCGACGATCAGTAAAC 94061 Query 95465 TAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTATTTGC 95524 | || |||||| || || | |||| ||||| || ||||| |||||||| || ||| Sbjct 94060 TCACATCCATGCACTTTTATGCTTGGAAGAAGGGGCTAAAGACGGGTATGTACTACATGC 94001 Query 95525 GAACCAGGCCAAAGGCGGACTCCATACAGTTCGCCCTAGAAAAG 95568 | | || || || ||| |||| |||||| || | || ||| Sbjct 94000 GCGGGCGCCCGAAAGCTGACGCCATCCAGTTCACCGTGGACAAG 93957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494698371079400