Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3385 107 2e-18 seq3828 98.7 9e-16 seq1101 91.5 1e-13 >seq3385 Length=38424 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 |||||||||||||| || | | || ||| || ||||| || ||||| ||||| Sbjct 14326 TTTTGAATATTGTAGTCCGAAAGGGCACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATC 14385 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | || ||||| || || || ||||| ||||||||| |||||||||||| | | |||| Sbjct 14386 AGACGTTGCTGCTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTAACATTTTCG 14445 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | || || || | || | || ||||| |||| ||| ||||||||| Sbjct 14446 ATGCTGTCGGACGATTCCACCTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTACAAAA 14505 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 14506 ATCTGCATG 14514 >seq3828 Length=141882 Score = 98.7 bits (108), Expect = 9e-16 Identities = 310/479 (65%), Gaps = 4/479 (1%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| ||||||||||| | || | ||| ||| ||||| |||||||| || || Sbjct 93960 GTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGCCCGCGCATGTAGTACATACCCGT 94019 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGGT 145836 ||| ||| |||| ||| | |||||||| ||| | | | || || ||| || Sbjct 94020 CTTTAGCCCCTTCTTCCAAGCATAAAAGTGCATGGATGTGAGTTTACTGAT--CGTCGGG 94077 Query 145837 TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCC 145896 ||||||| | || || || || ||||| || ||| | | ||||| || | | Sbjct 94078 TCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAGATATAAGCACCACGGTCAGCCGAC 94137 Query 145897 ATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGC 145956 | |||| || | | || || |||||||| | || || | || ||||| || Sbjct 94138 AGATCTAACACGGATTTCTGCTTGATTTCCCACACTGTCTTGTACTTCTCYTTGACATGG 94197 Query 145957 TGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAAT 146016 | || || | | || |||||||| |||| ||| || ||| | ||| || | Sbjct 94198 TCCGGAATGCTTTTCACCTTTTGCACAGARCCATGGTCGTTCAGTATCTGGTTACGGACC 94257 Query 146017 TCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGA 146076 || || || | || || || | || | || || || |||| ||| || | | Sbjct 94258 TCGGGCGTCCAGATACCCAGATCGATCAGCTCTTTCATCAGGTACTTGTTCACGATCGTG 94317 Query 146077 AACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCG 146136 ||||| || || || || || | |||| ||| ||| | ||||||| |||||| Sbjct 94318 AACTCACCAGCAAGCACACGTCGATTGTACATGTTCGACGTGTATGGCTCGATGGACTCG 94377 Query 146137 TTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTT 146195 |||||||| || ||||| || |||| ||| ||||||||| ||||| ||||||||||| Sbjct 94378 TTGTTACCAAGGATCTGGGCAGTCGAAGCAGTAGGCATGGGAGCCACTAGCAAAGAGTT 94436 >seq1101 Length=81374 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47485 CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCA 47544 |||||||||| ||| || |||| |||||||| | ||| | | |||||||| | |||| Sbjct 7769 CCAAGATTTATCACGCCAAGAACCCATTCGACTGGATGGATATGATTTCGCTACAAGGCA 7828 Query 47545 AGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 |||||||||||||||| ||||| || ||||| ||| Sbjct 7829 AGACCAACTTTTTCGAAAAGCGTGTGGGCGAGTAT 7863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475476935803600