Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1101 127 3e-24 seq446 114 2e-20 >seq1101 Length=81374 Score = 127 bits (140), Expect = 3e-24 Identities = 525/813 (65%), Gaps = 20/813 (2%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || || ||||| ||||| ||||| ||||| || | || || | ||||| Sbjct 7862 TACTCGCCCACACGCTTTTCGAAAAAGTTGGTCTTGCCTTGTAGCGAAATCATATCCATC 7803 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC--CCAATCTGTTTGAGGAGAC 127349 | || ||||||||||| | || |||| |||||| | ||| | || || | || Sbjct 7802 CAGTCGAATGGGTTCTTGGCGTGATAAATC-TTGGCAACACCCAGTGAGTAC-AGTAAAC 7745 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 127408 | || | ||| |||||||||||| | |||| | |||||||| || ||||| | | Sbjct 7744 GGTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATGAGCTCGA 7685 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||| | ||| | ||| | | |||||| |||||| ||||| | || || Sbjct 7684 CA-GGGAGTGAGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCCCGAATAATCTCG 7626 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAA--AGTCTTGAAGAGTTCC-ACA-GCAAA 127524 || | | || | | | | | ||| ||| | ||| | | ||| ||||| Sbjct 7625 TGCACC----CGACTCTCCGGCAACTTATTAACCAGTTTGGAATACATGAGACAAGCAAA 7570 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| | ||||| ||||| || || || || ||||||| ||||| ||||| Sbjct 7569 GTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCAGGCAT 7510 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||||| || ||||||| ||| || || | || || || || |||||||| || ||||| Sbjct 7509 AAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAATGCCCTC 7450 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT-TTGTATCAAACCACT 127703 ||| | || ||||| ||||||||||| || | || | ||| | ||| |||||| Sbjct 7449 CACCGAGGCAAACGCCAATAGACGCTCTGCGTACGA-TGACACTCGCGGGTCACACCACT 7391 Query 127704 TCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTT 127763 | | ||||| | || || || | || |||||| | || | || || | || | Sbjct 7390 TGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACGCAGCAGAT 7331 Query 127764 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGT 127823 | ||| ||| | || ||||| || |||| || || ||||| || || Sbjct 7330 GGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCGAATAGACCTCCGAGT 7271 Query 127824 GGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881 | | | ||| || ||| |||| || ||||||| |||| ||||| || || || Sbjct 7270 GAATATTCTCA--ATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTACTTGCAC 7213 Query 127882 CTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAA 127941 || | | |||||| | || || || ||||| |||||| | |||||||| Sbjct 7212 TTCGTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCAAAAAA 7153 Query 127942 CGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAG 128001 || || | || ||| | ||| | ||||||| || | || | | |||||| | ||| Sbjct 7152 GGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTTGTCCCAGTCCTTGAG 7093 Query 128002 ATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||| | || || | |||||| || ||||| Sbjct 7092 ATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCA 7060 >seq446 Length=286769 Score = 114 bits (126), Expect = 2e-20 Identities = 339/519 (65%), Gaps = 6/519 (1%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | ||||| ||||| || || || || ||||||| ||||| Sbjct 151005 AGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACC 150946 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| ||||| || ||||||| ||| || || | || || || || |||||||| || Sbjct 150945 AGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAAT 150886 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT-TTGTATCAA 127697 |||||||| | || ||||| ||||||||||| || | || | ||| | ||| Sbjct 150885 GCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGA-TGACACTCGCGGGTCAC 150827 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||||||| | ||||| | || || || | || |||||| | || | || || | Sbjct 150826 ACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACGCA 150767 Query 127758 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 || | | ||| ||| | || ||||| || |||| || || ||||| | Sbjct 150766 GCAGATGGTCCTTCTCTCCAGCATTCTTGATATATGTATCAATAAGCAGCGAATAGACCT 150707 Query 127818 CGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 127875 | ||| | | ||| || ||| |||| || ||||||| |||| ||||| || Sbjct 150706 CCGAGTGAATATTCTCA--ATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTAC 150649 Query 127876 CTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 127935 || || || | | |||||| | || || || ||||| |||||| | || Sbjct 150648 TTGCACTTCRTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGC 150589 Query 127936 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTC 127995 |||||| || || | || ||| | ||| | ||||||| || | || | | |||||| Sbjct 150588 AAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTTGTCCCAGTC 150529 Query 127996 GTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 | |||||| | || || | |||||| || ||||| Sbjct 150528 CTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCA 150490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613476409607400