Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_013600.1 Length=45169 Score E Sequences producing significant alignments: (Bits) Value seq2439 80.6 8e-11 >seq2439 Length=1004 Score = 80.6 bits (88), Expect = 8e-11 Identities = 229/352 (65%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 17655 TTACTGAGATTATCGACGCCCGCCTGCGCTACCCGCTAACCGCGCTGTTATTCGTGGAGT 17714 |||| ||| | |||||||| | ||||||||| || |||||| | | | | |||| Sbjct 361 TTACCGAGGTGATCGACGCGAAGATCCGCTACCCGAACACGGCGCTGCTCTACATCGAGT 302 Query 17715 TCGACGCTAAAGCGTTCCAGAACATCCCGCGCGTTTCCATTAAGTGCAAAGGCCGCAAAG 17774 | ||| | ||||| | |||||| ||| | || || |||| || Sbjct 301 TTTCCGCCGAGCAGTTCCGCAGTATCCCGGCCGTAACGGTTGAGACCAAATTGAAGAAGA 242 Query 17775 TGCTGGTTCCGAACAACTACGACCCGATCAACCATACCTATTCGGGCGACTGGGACGGGA 17834 ||| ||| |||| |||||||||||| | | | || |||| |||||||| | Sbjct 241 TGCAGGTGCCGAGCAACTACGACCCTGTGTCGCGCTCGTACAGTGGCGTTTGGGACGGCA 182 Query 17835 CGTTTAAACGCGCATGGACGGATAACCCTGCGTGGCACTGGTATGATATTTGTATTACTG 17894 | ||||| | || ||||| || ||||||| ||| || || ||| || ||| Sbjct 181 CCTTTAAGCAGGCCTGGACCGACAACCCTGTCTGGATGACCTACGACATTACCATCGCTG 122 Query 17895 AGCGCTTCGGCCTCGGTCGCCGGATCAAGCCGCAAATGCTAAACAGATATGCGCTCTACC 17954 | ||||| ||||| || || || ||||||||| ||| | ||| || | ||| |||| Sbjct 121 ACCGCTTTGGCCTGGGCCGTCGCATCAAGCCGTGGATGGTGGACAAATGGGAGCTGTACC 62 Query 17955 AGATTGCGAAGCGCTGCGATCAACTGGTCAGCGACGGCAACGGCGGGCAGGA 18006 |||| || | |||||| || |||| ||||| || || || ||||| Sbjct 61 GGATTTCGCAATACTGCGACCAGTTGGTGCCGGACGGGAAGGGTGGCCAGGA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144412314363330