Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3828 129 9e-25 >seq3828 Length=141882 Score = 129 bits (142), Expect = 9e-25 Identities = 380/582 (65%), Gaps = 15/582 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||||||||| |||||||| ||||||| | || | | | || |||||||| || Sbjct 93957 CTTGTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGCCCGCGCATGTAGTACATACC 94016 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 |||||||| ||||||| ||| | || | ||||||||| | ||||| || | | || Sbjct 94017 CGTCTTTAGCCCCTTCTTCCAAGCATAAAAGTGCATGGATGTGAGTTTACTGATCGTCGG 94076 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 |||||| ||||||||||| || ||||| || ||| ||| ||| | || || || | Sbjct 94077 GTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAGATATAAGCACCACGGTCAGCCGA 94136 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078 || || | | || |||||| || |||||||| |||||| || || || || Sbjct 94137 CAGATCTAACACGGATTTCTGCTTGATTTCCCACACTGTCTTGTACTTCTCYTTGACATG 94196 Query 204079 TTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC---ATCC 204134 | || | ||| ||| | || | || || | |||| ||||| || | | Sbjct 94197 GTCCGG-AATGCTTTTCACCTTTTGCACAGARCCATGGTCG---TTCAGTATCTGGTTAC 94252 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 ||| | ||| || |||| ||||||||| || ||||| ||| | || Sbjct 94253 GGACCTCGGGCGTCCAGATACCCAGATCGATCAGCTCTTTCATCAGGTACTTGTTCACGA 94312 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 || || || || | ||||| | ||| || ||| ||| ||| |||| |||| | Sbjct 94313 TCGTGAACTCACCAGCAAGCACACGTCGATTGTACATGTTCGACGTGTATGGCTCGATGG 94372 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 ||||||||| || | ||||| || || || || ||||||||||||| |||| | Sbjct 94373 ACTCGTTGTTACCAAGGATCTGGGCAGTCGAAGCAGTAGGCATGGGAGCCACTAGCAAAG 94432 Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC-----GTGCAT 204369 ||||||| | ||||| || || | ||||||| | |||||| | || Sbjct 94433 AGTTGCGGATACCGTGCTTAATCACATTCTTTTTCAGAGCGACCCAGTCCCAAAGACCAG 94492 Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 | || || | || ||||||||||| ||||| ||||| || Sbjct 94493 AGGAC--GGAATGACACCCCACATGTCAAACTGGAAGATACC 94532 Score = 111 bits (122), Expect = 3e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||||||||| |||||||| ||||||| | || | | | || |||||||| || Sbjct 93212 CTTGTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGCCCGCGCATGTAGTACATACC 93271 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 |||||||| ||||||| ||| | || | ||||||||| | ||||| || | | || Sbjct 93272 CGTCTTTAGCCCCTTCTTCCAAGCATAAAAGTGCATGGATGTGAGTTTACTGATCGTCGG 93331 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 |||||| ||||||||||| || ||||| || ||| ||| ||| | || || || | Sbjct 93332 GTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAGATATAAGCACCACGGTCAGCCGA 93391 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC 204064 || || | | || |||||| || |||||||| |||||| || Sbjct 93392 CAGATCTAACACGGATTTCTGCTTGATTTCCCACACTGTCTTGTAC 93437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795115293148400