Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3695 136 2e-26 seq1147 136 2e-26 seq2222 111 6e-19 seq3417 105 3e-17 seq852 93.3 2e-13 >seq3695 Length=154351 Score = 136 bits (150), Expect = 2e-26 Identities = 344/518 (66%), Gaps = 9/518 (2%) Strand=Plus/Plus Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 |||| || | | ||||| || ||| | |||||||||| || |||| | | || | Sbjct 44753 AAAAGACGTTGTTTGATGTGAAGCGTCTCATTGGCCGTAAATACAATGACAAGTCGGTCC 44812 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 || || || || || || ||||||| | || || | | || || || | ||||| Sbjct 44813 AAGCCGACAAGAAGTTGTTGCCTTATGAACTCGTGAACAAGGACGGTAAACCTTTTATTC 44872 Query 451209 AAGTAAATTATAAAGGT-GAAA--CTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 |||| |||| |||| |||| | || |||||||| |||||| | || | |||| Sbjct 44873 AAGTGG-TTATCAAGGGAGAAAAGCGTCAA--TTTGCTCCAGAAGAAGTCTCGGCCATGG 44929 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | | || |||||||| ||| | | ||| ||| |||||| || ||| || | Sbjct 44930 TGTTGACCAAAATGAAGCAAATATCTGAAGGATACATTGGTCGAGAGGTGTTTGACGCTG 44989 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | | || || || ||||| || || || || ||||| ||||| || || ||||| || Sbjct 44990 TTGTGACAGTCCCGGCTTACTTTAACGACGCGCAACGTCAAGCGACCAAGGATGCTGGTA 45049 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 ||||||||| | | || | || || ||||||||||| ||||| ||||| | || | Sbjct 45050 CCATTGCTGGTCTTACGGTGCAACGTATCATTAATGAACCGACAGCTGCTGCGATTGCCT 45109 Query 451446 ATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 |||| | | || || | | || || || ||| | | || |||||||| |||| Sbjct 45110 ATGGCATTGACAA---GAAGGCACAAGGCGAGAAGAATGTGCTGGTGTTTGATTTGGGTG 45166 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 |||| || |||| | | || | ||||| | || || |||||||| ||||| Sbjct 45167 GAGGGACCTTTGATGTGACATTGCTGGCGATTGATGGCGGTGTGTTTGAAGTCTTGGCAA 45226 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 | || ||||| || || | || |||||||| ||||| Sbjct 45227 CGAACGGTGACACGCACTTGGGTGGTGAAGACTTTGAT 45264 >seq1147 Length=79845 Score = 136 bits (150), Expect = 2e-26 Identities = 343/518 (66%), Gaps = 9/518 (2%) Strand=Plus/Plus Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 |||| || | | ||||| || ||| | |||||||||| || |||| | | || | Sbjct 39540 AAAAGACGTTGTTTGATGTGAAGCGTCTCATTGGCCGTAAATACAATGACAAGTCRGTCC 39599 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 || || || || || || ||||||| | || || | | || || || | ||||| Sbjct 39600 AAGCCGACAAGAAGTTGTTGCCTTATGAACTCGTGAACAAGGACGGTAAACCTTTTATTC 39659 Query 451209 AAGTAAATTATAAAGGT-GAAA--CTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 |||| |||| |||| |||| | || |||||||| |||||| | || | |||| Sbjct 39660 AAGTGG-TTATCAAGGGAGAAAAGCGTCAA--TTTGCTCCAGAAGAAGTCTCRGCCATGG 39716 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | | || || ||||| ||| | | ||| ||| |||||| || ||| || | Sbjct 39717 TGTTGACCAARATGAAGCAAATATCTGAAGGATACATTGGTCGAGAGGTGTTTGACGCTG 39776 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | | || || || ||||| || || || || ||||| ||||| || || ||||| || Sbjct 39777 TTGTGACAGTCCCGGCTTACTTTAACGACGCGCAACGTCAAGCGACCAAGGATGCTGGTA 39836 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 ||||||||| | | || | || || ||||||||||| ||||| ||||| | || | Sbjct 39837 CCATTGCTGGTCTTACGGTGCAACGTATCATTAATGAACCGACAGCTGCTGCGATTGCCT 39896 Query 451446 ATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 |||| | | || || | | || || || ||| | | || |||||||| |||| Sbjct 39897 ATGGCATTGACAA---GAAGGCACAAGGCGAGAAGAATGTGCTGGTGTTTGATTTGGGTG 39953 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 |||| || |||| | | || | ||||| | || || |||||||| ||||| Sbjct 39954 GAGGGACCTTTGATGTGACATTGCTGGCGATTGATGGYGGTGTGTTTGAAGTCTTGGCAA 40013 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 | || ||||| || || | || |||||||| ||||| Sbjct 40014 CGAACGGTGACACGCACTTGGGTGGTGAAGACTTTGAT 40051 >seq2222 Length=488333 Score = 111 bits (122), Expect = 6e-19 Identities = 817/1295 (63%), Gaps = 47/1295 (4%) Strand=Plus/Plus Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279 ||||| || || || || || || ||||| |||||||||||||| || | ||| ||| Sbjct 68460 AAAGGAGAGACCAAGACGTTCCAGCCCGAAGAGATTTCATCTATGGTGCTAATTAAGATG 68519 Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339 || | || || || |||||| | ||| | ||||||| |||| || || Sbjct 68520 CGCGAGATCGCGGAGGCTTACATTGGTAAGCAAGTGAAGAATGCAGTGGTTACGGTCCCT 68579 Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 ||||| || || || | || || || || || ||||| || ||| |||||||||||| Sbjct 68580 GCTTACTTTAACGACTCGCAGCGTCAGGCGACCAAAGACGCCGGAGCTATTGCTGGTTTG 68639 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 || || || || ||||| || || || || || |||||| | || || || | ||| Sbjct 68640 AACGTGCTGCGGATTATCAACGAGCCGACCGCTGCTGCTATCGCCTACGG-TTTGGA--- 68695 Query 451460 TCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGAT 451519 ||||| | | || | ||| | | | || ||| | || || || ||| ||| Sbjct 68696 -CAAAA-AGGGTGGCGAGCACAATGTGCTCATTTTCGATCTGGGCGGTGGCACTTTCGAT 68753 Query 451520 ACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACT 451579 || | | ||||| || || | || || || ||||| ||| ||||| || Sbjct 68754 GTATCGCTGTTGAGTATTGAGGAGGGCATCTTCGAGGTGAAGGCTACCGCCGGTGACACG 68813 Query 451580 CATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATGGTTGAAAACTGATGTTCAA 451639 ||| | || ||||||||| | || ||| | ||||| | || | || |||||| Sbjct 68814 CATTTGGGCGGTGAAGATTTCGACAATCGTCTGGTGGAGTACTTTGTGGCCGA-GTTCAA 68872 Query 451640 -CGAAAACTAAAAGTAGATATTTCTACTAACCAAAAAGCACTTAGACGTCTTAAAACATC 451698 || |||| |||||| || |||||| || || |||| ||| || | Sbjct 68873 GCGCAAACACCGCAAAGATATATCGGGGAACCAACGTGCTCTACGACGCCTTCGTACCGC 68932 Query 451699 AGCAGAAAAAGCTAAAATTACACT---CAGTTCAACACAAAC-TACTAGTATAAACATTG 451754 || | ||| ||| || | || ||| | || | ||| || | |||| Sbjct 68933 TTGCGAGAGAGCAAAACGAACTTTGTCCACTTCCGCCCAGGCGTAC----ATTGAGATTG 68988 Query 451755 ATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTGCTAAATTTGA--ATC 451812 ||| | |||| || || |||| | | || |||| ||||| ||||| ||| Sbjct 68989 ATACGCTGTTTGAGGGCATTGATTTCAATTCGACGATTACTCGTGCGCGTTTTGAGGATC 69048 Query 451813 AATTTGTTCCAGTATTTTT--GCACGGGTAATGAAACCTGTTGATCAAGTATTACATGAT 451870 | ||| || ||||| | | | ||| |||| || | ||||| | | ||| Sbjct 69049 --TGTGTGGAAGCTTTTTTCAGAAAACG--ATGGAACCAGTCGCACAAGTGCTGCGTGAC 69104 Query 451871 TCTAAAATTAGTAAAGATAAAATTG-ATGAAATTGTGCTTGTAGGAGGTTCTACACGAAT 451929 || ||||| |||| | || | || ||||| || || || ||||| || || || Sbjct 69105 TC-CAAATTGTCGAAGAACCAGGTGAACGAGATTGTCCTCGTTGGCGGTTCGACTCGTAT 69163 Query 451930 TCCTAAAATTCAAGATATGTTG-TCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCG 451988 || ||| ||||| | ||||| | ||| ||| |||||| |||| | ||| Sbjct 69164 CCCGAAAGTTCAACAGTTGTTGATGGACTT-TTTCAATGGAAAAGAACTGTTCAAGTCGA 69222 Query 451989 TAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTT 452048 | ||||| || || ||||| || ||||||||| | || ||||| || ||| | |||| Sbjct 69223 TTAATCCGGACGAGGCTGTGGCGTATGGTGCTACCGTCCAAGCTGCAATTTT---AGGTG 69279 Query 452049 CAGATG--ATG------AAAAATTAGGAGATATT-CTGTTAGTAGATGTAACACCTCTAT 452099 | || || || |||| | || |||| | ||||| | || | | Sbjct 69280 GCGGTGGCTTGTCTTCCAAGCTGCAGGACCTTTTGCTGT---TGGATGTCGCGCCGTTGT 69336 Query 452100 CTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTA 452159 | |||||| | ||||| || ||||| | ||||| || | || ||| ||| | Sbjct 69337 CGCTTGGATTGGAAACGGCAGGTGGGGTCATGACCAAGCTTATCCCACGTAACACTACCG 69396 Query 452160 TTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAG-TGATAACCAACCAGGTGTAACT 452218 |||| ||||||| ||| | ||| || | | | || ||||| || |||||| Sbjct 69397 TTCCAGCCAAAAAGACACAATCGTTTTCGAC-GTATGCCGACAACCAGCCCGGTGTATTG 69455 Query 452219 ATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTT 452278 |||||||||||||| || ||||| | ||||| || |||||| || | || | ||| Sbjct 69456 ATTCAAGTGTTTGAGGGCGAACGCTCCATGACTCGCGATAATCATCTTTTGGGCAAGTTT 69515 Query 452279 ACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGAT 452338 | ||| |||||| || ||||| | || ||||||||||| | || | ||| Sbjct 69516 AATCTGGATGGCATTCCGCCCATGCCTCGTGGCGTGCCTCAAATTGATGTCACGTTTGAC 69575 Query 452339 GTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAA 452398 |||| | ||||| ||| | || |||| || ||||||| || |||| || |||| Sbjct 69576 ATTGACGTCAATGGCATTTTGAACGTGACGGCGATTGAAAAGTCGACTGG-CAAGGAGAA 69634 Query 452399 -AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGT 452457 || || || || || || || ||| || | || | || ||||| || ||||| Sbjct 69635 CAAGATCACGATCACGAACGACAAAGGTCGACTGTCGCAGGATGATATCGACCGCATGGT 69694 Query 452458 AGATGAAGCAGAAAAATTCAAGGATGATGATGAAC 452492 | || || ||||| | ||| || | ||||||| Sbjct 69695 TGCCGACGCGGAAAAGTACAAAGACCAAGATGAAC 69729 Score = 96.9 bits (106), Expect = 1e-14 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| |||||||| || || ||||||||||| | || || || || |||||||||| Sbjct 93507 ATGCAGTGATTACTGTACCGGCCTATTTCAATGACTCGCAGCGTCAGGCCACTAAAGATG 93566 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || ||||| | ||||| ||||| || ||||| || || ||||| ||||| Sbjct 93567 CCGGTGCCATCGCTGGACTCAATGTGCTTCGTATCATTAACGAGCCGACAGCTGCTGCCA 93626 Query 451440 TAGCATATGGACT 451452 | || ||||| || Sbjct 93627 TTGCCTATGGTCT 93639 >seq3417 Length=183207 Score = 105 bits (116), Expect = 3e-17 Identities = 356/548 (65%), Gaps = 21/548 (4%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| |||||||| || ||||| | || ||||| ||||| | || | || | || Sbjct 14376 ATTGGTATTGATCTCGGTACCACGTACTCGTGTGTGGGTGTGTGGAAAGACGGTCAGGTG 14435 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 || || || || ||| | ||| || || || || |||||||| || | || Sbjct 14436 GAGATCATTGCCAATAGTGAGGGAAACCGTACGACCCCGTCATGGGTTGCATTCAATGAA 14495 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAAA--TCAATGGTAAATTCAAATGCCAAAAACA 451094 ||| | ||| | || |||||||||| |||| | | | ||||| | |||| Sbjct 14496 AGTGAACGTCTTATTGGTGAAGCTGCTAAGATTCAA--GCAGCTGGGAATGCTACGAACA 14553 Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAG 451154 | || | |||||| |||||| | ||||| || | | | |||||| || | |||| Sbjct 14554 CGGTGTTTGATGCAAAACGTATTATTGGACGCAGCTTTAGTGATGACGTAGTCAAGAAAG 14613 Query 451155 AGAAAAAATTCTTT----TCT-TATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCA 451209 | ||| |||| ||| ||| | | | | | | | | ||| | ||| | Sbjct 14614 ATGCRAAACACTTTCCATTCTCTATCACGGA--AGGTGACGATGACAAGGTCCTGATTGA 14671 Query 451210 AGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCT 451269 || | | ||| || |||| || | |||| ||||||||||||| || || ||||| | Sbjct 14672 GGTTGAGTTTAAGGGAGAAAAAAAGAGTTTTACTCCTGAAGAAATCTCGTCGATGGTGYT 14731 Query 451270 TACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAG----TTACTGATGCA 451324 |||| ||||| |||||||||||| | | ||||| ||| | | | || Sbjct 14732 -ACTACGTATGAAGGAAACAGCAGAAGCTTTTCTTGGT----CAGAGCATCTCCCAGGCT 14786 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||| || || |||||||| ||||| ||||| ||| | || || ||||| || Sbjct 14787 GTTGTTACAGTACCTGCTTATTTTAATGACCAGCAACGTCAATCCACCAAGGATGCTGGT 14846 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||||| | |||| || || || ||||||||||| || ||||| || || Sbjct 14847 TCTATTGCTGGTCTGGATGTCAAACGTATCATCAATGAACCTACGGCTGCTGCCCTTGCC 14906 Query 451445 TATGGACT 451452 || || || Sbjct 14907 TACGGTCT 14914 >seq852 Length=2526 Score = 93.3 bits (102), Expect = 2e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| |||||||| || || ||||||||||| | || || || || ||||||||||| Sbjct 202 GCAGTGATTACTGTACCGGCCTATTTCAATGACTCGCAGCGTCAGGCCACTAAAGATGCC 261 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || || ||||| | ||||| ||||| || ||||| || || ||||| ||||| | Sbjct 262 GGTGCCATCGCTGGACTCAATGTGCTTCGTATCATTAACGAGCCGACAGCTGCTGCCATT 321 Query 451442 GCATATGGACT 451452 || ||||| || Sbjct 322 GCCTATGGTCT 332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975616764723620