Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1224 86.0 8e-12 seq413 86.0 8e-12 >seq1224 Length=252807 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 176885 ACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCG 176944 ||||| |||||||| |||||| | || ||||| ||||| ||||||||||| ||||| Sbjct 48073 ACAGACGCATCACGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACCGTACTGATCA 48014 Query 176945 CGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACG 177004 || || || || | ||||| || || || || | || || |||||||| || |||| | Sbjct 48013 CGCCCGACAACTGCAAGACCTGCCACTGCCAGTGCCTTTGCTGAATCACCTTCGGTCAGG 47954 Query 177005 ATGAG 177009 || || Sbjct 47953 ATAAG 47949 >seq413 Length=106048 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 176885 ACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCG 176944 ||||| |||||||| |||||| | || ||||| ||||| ||||||||||| ||||| Sbjct 87144 ACAGACGCATCACGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACCGTACTGATCA 87085 Query 176945 CGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACG 177004 || || || || | ||||| || || || || | || || |||||||| || |||| | Sbjct 87084 CGCCCGACAACTGCAAGACCTGCCACTGCCAGTGCCTTTGCTGAATCACCTTCGGTCAGG 87025 Query 177005 ATGAG 177009 || || Sbjct 87024 ATAAG 87020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620711246490800