Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1101 140 4e-28 seq446 140 4e-28 seq1224 84.2 3e-11 seq413 84.2 3e-11 >seq1101 Length=81374 Score = 140 bits (154), Expect = 4e-28 Identities = 173/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| ||| ||| | |||||||| || ||| || || |||||||||| || || Sbjct 7574 GCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCA 7515 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| ||||| || ||||||| |||| | || | |||||| || ||||||||||| || Sbjct 7514 GGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAATG 7455 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAA 117452 |||||||| | |||||||| || || ||||| ||| | || || ||| | |||| | Sbjct 7454 CCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGA-TGACACTCGCGGGTCACA 7396 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||| || | |||||| || || ||||| | | |||||||| || | ||||| Sbjct 7395 CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGC 7342 >seq446 Length=286769 Score = 140 bits (154), Expect = 4e-28 Identities = 173/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| ||| ||| | |||||||| || ||| || || |||||||||| || || Sbjct 151004 GCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCA 150945 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| ||||| || ||||||| |||| | || | |||||| || ||||||||||| || Sbjct 150944 GGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAAATG 150885 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAA 117452 |||||||| | |||||||| || || ||||| ||| | || || ||| | |||| | Sbjct 150884 CCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGA-TGACACTCGCGGGTCACA 150826 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||| || | |||||| || || ||||| | | |||||||| || | ||||| Sbjct 150825 CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGC 150772 >seq1224 Length=252807 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 169325 GAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCC 169384 |||||| |||| || || || || |||||| | || ||||||||||||||||| || Sbjct 48083 GAGCTGCACCACAGACGCATCACGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACC 48024 Query 169385 ATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACC 169444 || |||||||| || || || | ||||| || || || || | || ||||||||||| Sbjct 48023 GTACTGATCACGCCCGACAACTGCAAGACCTGCCACTGCCAGTGCCTTTGCTGAATCACC 47964 Query 169445 CTCCGT 169450 || || Sbjct 47963 TTCGGT 47958 >seq413 Length=106048 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 169325 GAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCC 169384 |||||| |||| || || || || |||||| | || ||||||||||||||||| || Sbjct 87154 GAGCTGCACCACAGACGCATCACGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACC 87095 Query 169385 ATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACC 169444 || |||||||| || || || | ||||| || || || || | || ||||||||||| Sbjct 87094 GTACTGATCACGCCCGACAACTGCAAGACCTGCCACTGCCAGTGCCTTTGCTGAATCACC 87035 Query 169445 CTCCGT 169450 || || Sbjct 87034 TTCGGT 87029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589951190338600