Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3385 93.3 3e-14 >seq3385 Length=38424 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 || ||||| || |||||||||||| ||| |||| |||||||| || || ||||| || Sbjct 14326 TTTTGAATATTGTAGTCCGAAAGGGCACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATC 14385 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || |||||||| || |||| | || |||||||| || ||||| || || || | Sbjct 14386 AGACGTTGCTGCTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTAAC--AT--T 14441 Query 34914 ATCGATTC-ACCGGCC---TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| | ||| | || || || | || ||||| || || || | |||||| || Sbjct 14442 TTCGATGCTGTCGGACGATTCCACCTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTAC 14501 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 14502 AAAAATCTGCAT 14513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324617714764920