Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq446 114 1e-20 seq1101 113 5e-20 >seq446 Length=286769 Score = 114 bits (126), Expect = 1e-20 Identities = 371/568 (65%), Gaps = 18/568 (3%) Strand=Plus/Minus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||| | ||| ||||| || || | ||||| || | ||| || | || || || | Sbjct 151015 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 150956 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCA 19071 | | | ||||||||| || || | ||| || | ||| || || || ||| || ||||| Sbjct 150955 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 150897 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| || || || || | ||||| || | ||| | ||| | || | | | || Sbjct 150896 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTA-CGATGA-CA 150839 Query 19132 TTATTATG--AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCT 19189 | | | ||| || |||||||||| || |||||||| |||||||| || || | Sbjct 150838 CTCGCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTAT 150779 Query 19190 CTATAGAATTAAATAGATA--CATACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 | || | | | |||| | | | ||| | | || || | ||||| |||||| Sbjct 150778 CAATGGCACGCAGCAGATGGTCCTTCTCTC--CAGCATTCTTGATATATG----TATCAA 150725 Query 19248 TAAACTG----TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAAC 19303 ||| | | || | || || |||||||| || || || |||||||| ||||| || | Sbjct 150724 TAAGCAGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGC 150665 Query 19304 ATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTA 19363 | | ||||| | || || ||||| | | ||| | | | | ||||| || || | Sbjct 150664 AGCGAGCTTCAGGTACTTGCACTTCRTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAA 150605 Query 19364 TTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGG 19423 | ||||| || ||||||||||| || | ||||| || | ||||| ||||| | Sbjct 150604 TGCCATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCG 150545 Query 19424 TTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAG 19483 | | | | | ||| || || | ||| | | || | || || ||||||| || | Sbjct 150544 TGAGTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACG 150485 Query 19484 AAGCCTCTGCTTTTTTATACATGTTCCA 19511 ||||||| || || || ||||| | ||| Sbjct 150484 AAGCCTCGGCCTTCTTGTACATTTGCCA 150457 >seq1101 Length=81374 Score = 113 bits (124), Expect = 5e-20 Identities = 371/568 (65%), Gaps = 18/568 (3%) Strand=Plus/Minus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||| | ||| ||||| || || | ||||| || | ||| || | || || || | Sbjct 7585 ACATGAGACAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGA 7526 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCA 19071 | | | ||||||||| || || | ||| || | ||| || || || ||| || ||||| Sbjct 7525 AGCTGAGACCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGA-GCAGAAGGATCCG 7467 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| || || || || | ||||| || | ||| | ||| | || | | | || Sbjct 7466 GAGAAGAAAATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTA-CGATGA-CA 7409 Query 19132 TTATTATG--AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCT 19189 | | | ||| || |||||||||| || |||||||| |||||||| || || | Sbjct 7408 CTCGCGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTAT 7349 Query 19190 CTATAGAATTAAATAGATA--CATACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 | || | | | |||| | | | ||| | | || || | ||||| |||||| Sbjct 7348 CAATGGCACGCAGCAGATGGTCCTTCTCTC--CAGCATTCTTGATATATG----TATCAA 7295 Query 19248 TAAACTG----TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAAC 19303 ||| | | || | || || |||||||| || || || |||||||| ||||| || | Sbjct 7294 TAAGCAGCGAATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGC 7235 Query 19304 ATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTA 19363 | | ||||| | || || ||||| | | ||| | | | | ||||| || || | Sbjct 7234 AGCGAGCTTCAGGTACTTGCACTTCGTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAA 7175 Query 19364 TTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGG 19423 | ||||| || ||||||||||| || | ||||| || | ||||| ||||| | Sbjct 7174 TGCCATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCG 7115 Query 19424 TTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAG 19483 | | | | | ||| || || | ||| | | || | || || ||||||| || | Sbjct 7114 TGAGTTTGTCCCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACG 7055 Query 19484 AAGCCTCTGCTTTTTTATACATGTTCCA 19511 ||||||| || || || ||||| | ||| Sbjct 7054 AAGCCTCGGCCTTCTTGTACATTTGCCA 7027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562080589164600