Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3417 161 8e-34 seq2222 158 1e-32 seq852 131 1e-24 seq3695 107 2e-17 seq1147 105 5e-17 seq3451 93.3 3e-13 seq213 93.3 3e-13 seq3954 86.0 5e-11 >seq3417 Length=183207 Score = 161 bits (178), Expect = 8e-34 Identities = 370/548 (68%), Gaps = 13/548 (2%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||| | || ||||| || ||||| ||||| ||| || | ||| | || Sbjct 14375 TATTGGTATTGATCTCGGTACCACGTACTCGTGTGTGGGTGTGTGGAAAGACGGTCAGGT 14434 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 || || ||||||||| | | || ||| | || || || || | ||| | |||| || Sbjct 14435 GGAGATCATTGCCAATAGTGAGGGAAACCGTACGACCCCGTCATGGGTTGCATTCAATGA 14494 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || ||||| | | ||||||| || || || |||||| |||| ||| |||| || || Sbjct 14495 AAGTGAACGTCTTATTGGTGAAGCTGCTAAGATTCAAGCAGCTGGGAATGCTACGAACAC 14554 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT--GTTCAGGCA 550231 | |||||||| |||||| | |||||| | || |||| |||| ||| || || | Sbjct 14555 GGTGTTTGATGCAAAACGTATTATTGGACGCAGCTTTAGTGAT--GACGTAGTCAAGAAA 14612 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTG--GAAAACCTTAT-ATTGAA 550288 ||| || || | || ||| || | | | | || || | | ||||| Sbjct 14613 GATGCRAAACACTTTCCATTCTCTATCACGGAAGGTGACGATGACAAGGTCCTGATTGAG 14672 Query 550289 GCT-ACTCATGAAGGATCTGTTAAACAATTTT-CACCAGAACAAATTTCATCTATGGTTT 550346 | | | | | |||| ||| | |||| | || ||| |||| || || ||||| Sbjct 14673 GTTGAGT--TTAAGGGAGAAAAAAAGAGTTTTACTCCTGAAGAAATCTCGTCGATGGTGY 14730 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTA 550405 || | ||||| ||||||| |||||| ||||||| || | | | | || || Sbjct 14731 TACTACGTATGAAGGAAACAGCAGAAGCTTTTCTTGGTCAGAGCATCTCCC-AGGCTGTT 14789 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | || ||||| || |||||||||||| ||||||||| | || || |||||||| | Sbjct 14790 GTTACAGTACCTGCTTATTTTAATGACCAGCAACGTCAATCCACCAAGGATGCTGGTTCT 14849 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| || |||| ||||| |||||||||||||| |||||||| ||||| || Sbjct 14850 ATTGCTGGTCTGGATGTCAAACGTATCATCAATGAACCTACGGCTGCTGCCCTTGCCTAC 14909 Query 550526 GGACTTGA 550533 || || || Sbjct 14910 GGTCTGGA 14917 >seq2222 Length=488333 Score = 158 bits (174), Expect = 1e-32 Identities = 370/553 (67%), Gaps = 10/553 (2%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| ||||| ||||| |||| || || || ||||||||||| ||||||||| | Sbjct 93131 TGTGTCGGTGTGTGGCAGAATGACCGTGTAGARATCATTGCCAATGACCAAGGTAACCGC 93190 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || || ||||| | |||||||| || || | | | |||||||||| || || Sbjct 93191 ACCACGCCGTCCTATGTGGCATTCACGGACACGGAGCGTCTTATTGGTGATGCCGCCAAG 93250 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAG- 550203 | |||| | || || | ||| || | ||||| || || || | ||||| | Sbjct 93251 AACCAAGTCGCTATGAACGCCCACAACACGGTGTTTGACGCCAAGCGCCTGATTGGTCGC 93310 Query 550204 AAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAA 550263 ||||| | || ||| || || || || | ||| || ||||| ||| | | Sbjct 93311 AAGTTCTCG-GACCCGATCGTGCAAGCTGACACGAAACACTGGCCGTTCAAGGTCACAGC 93369 Query 550264 TGTTTCTGGA---AAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTC 550320 || | | || || || | ||| || | | | |||| || || | || | Sbjct 93370 TGGTGCCGGTGACAAGCCGCAAATTACAG-TGCAATTCAAGGGCGAGTCGAAGACGTTCC 93428 Query 550321 A-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 | || || | || || |||||||| || || || ||| | || |||||| Sbjct 93429 AGCCTGAGGAGATCTCGTCTATGGTGTTGATTAAGATGCGCGAGGTGGCGGAGGCTTTTA 93488 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | || | || || | | ||||||| || |||||||| || ||||| |||||||| || | Sbjct 93489 TYGGCAAGGAGGTGAAGAATGCAGTGATTACTGTACCGGCCTATTTCAATGACTCGCAGC 93548 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||| || ||||||||||| || || |||||||| ||||| |||||||| || || | Sbjct 93549 GTCAGGCCACTAAAGATGCCGGTGCCATCGCTGGACTCAATGTGCTTCGTATCATTAACG 93608 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATG 550559 | || || |||||||| |||| ||||| || || ||| || | |||| ||||| Sbjct 93609 AGCCGACAGCTGCTGCCATTGCCTATGGTCTGGACAAA---AAGGGGGGCGAACGTAATG 93665 Query 550560 TACTCATCTTTGA 550572 | || |||||||| Sbjct 93666 TGCTGATCTTTGA 93678 Score = 122 bits (134), Expect = 7e-22 Identities = 333/500 (67%), Gaps = 15/500 (3%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 || |||||||| ||||| |||| || || || ||||||||||| || || || | Sbjct 68184 TGCGTTGGTGTCTGGCAGAATGACCGTGTCGAGATCATTGCCAATGACCAGGGAAATCGC 68243 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || || ||||| | || ||||| ||||| | | | |||| ||||| || || Sbjct 68244 ACGACGCCGTCGTATGTGGCCTTTACGGACACTGAGCGTCTTATTGGCGATGCTGCCAAG 68303 Query 550145 TATCAAG---CCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 | |||| ||| || ||| | |||||| | ||||| | ||||| || || || Sbjct 68304 AACCAAGTAGCCA-TG--AATGCCCACAATACGGTGTTTGACGTCAAACGCTTGATCGGG 68360 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 | | |||| ||||| || ||| | || || | ||| ||||| ||| | | | Sbjct 68361 CGCAAATTTACTGATTTAGAAGTGCAGTCGGACATTAGGCACTGGCCGTTCAAGGTCTCT 68420 Query 550262 AATGTTTCTG-GAA--AACCTTATAT--TGAAGCTACTCATGAAGGATCTGTTAAACAAT 550316 | | ||| ||| ||||| | | || || | ||| ||||| | || | Sbjct 68421 CGCGGTCCTGAGAACAAACCTCAGGTGGTGGTGCAATTCA--AAGGAGA-GACCAAGACG 68477 Query 550317 TTTCA-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 || || || ||| | |||||||||||||| |||| || ||| | | || ||| Sbjct 68478 TTCCAGCCCGAAGAGATTTCATCTATGGTGCTAATTAAGATGCGCGAGATCGCGGAGGCT 68537 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | ||||| | |||| | | ||||||| | || || || || || ||||| ||||| Sbjct 68538 TACATTGGTAAGCAAGTGAAGAATGCAGTGGTTACGGTCCCTGCTTACTTTAACGACTCG 68597 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 || ||||| || || ||||| || ||| ||||||||| | || || || || |||||| Sbjct 68598 CAGCGTCAGGCGACCAAAGACGCCGGAGCTATTGCTGGTTTGAACGTGCTGCGGATTATC 68657 Query 550496 AATGAACCTACTGCTGCTGC 550515 || || || || |||||||| Sbjct 68658 AACGAGCCGACCGCTGCTGC 68677 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762 |||||||| || | | ||||||||| || |||||||| || || ||||||||||| Sbjct 93639 AGACCATAGGCAATGGCAGCAGCTGTCGGCTCGTTAATGATACGAAGCACATTGAGTCCA 93580 Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822 || || |||||| |||||| ||||| || | ||||| ||||| || || ||| Sbjct 93579 GCGATGGCACCGGCATCTTTAGTGGCCTGACGCTGCGAGTCATTGAAATAGGCCGGTACA 93520 Query 361823 GTAATCACTGC-TTTTTCAACT 361843 ||||||||||| || |||| || Sbjct 93519 GTAATCACTGCATTCTTCACCT 93498 >seq852 Length=2526 Score = 131 bits (144), Expect = 1e-24 Identities = 148/198 (75%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 550375 TTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTC 550434 |||| |||| | || || | | | ||||| || |||||||| || ||||| |||||||| Sbjct 177 TTTTATTGGCAAGGAGGTGAAGAAGGCAGTGATTACTGTACCGGCCTATTTCAATGACTC 236 Query 550435 ACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTAT 550494 || ||||| || ||||||||||| || || |||||||| ||||| |||||||| || Sbjct 237 GCAGCGTCAGGCCACTAAAGATGCCGGTGCCATCGCTGGACTCAATGTGCTTCGTATCAT 296 Query 550495 CAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACT 550554 || || || || |||||||| |||| ||||| || || ||| || | |||| Sbjct 297 TAACGAGCCGACAGCTGCTGCCATTGCCTATGGTCTGGACAAA---AAGGGGGGCGAACG 353 Query 550555 TAATGTACTCATCTTTGA 550572 |||||| || |||||||| Sbjct 354 TAATGTGCTGATCTTTGA 371 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762 |||||||| || | | ||||||||| || |||||||| || || ||||||||||| Sbjct 332 AGACCATAGGCAATGGCAGCAGCTGTCGGCTCGTTAATGATACGAAGCACATTGAGTCCA 273 Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822 || || |||||| |||||| ||||| || | ||||| ||||| || || ||| Sbjct 272 GCGATGGCACCGGCATCTTTAGTGGCCTGACGCTGCGAGTCATTGAAATAGGCCGGTACA 213 Query 361823 GTAATCACTG-CTTTTTCAACT 361843 |||||||||| ||| |||| || Sbjct 212 GTAATCACTGCCTTCTTCACCT 191 >seq3695 Length=154351 Score = 107 bits (118), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 550313 CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGT 550372 |||||| | |||||| || | || | ||||| || | |||||||| |||| | | Sbjct 44899 CAATTTGCTCCAGAAGAAGTCTCGGCCATGGTGTTGACCAAAATGAAGCAAATATCTGAA 44958 Query 550373 GCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 | | |||||| ||| || || || || | || || || || || ||||| ||| Sbjct 44959 GGATACATTGGTCGAGAGGTGTTTGACGCTGTTGTGACAGTCCCGGCTTACTTTAACGAC 45018 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492 | ||||||||||| || || |||||||| |||||||| |||| || | ||||| Sbjct 45019 GCGCAACGTCAAGCGACCAAGGATGCTGGTACCATTGCTGGTCTTACGGTGCAACGTATC 45078 Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || |||||||| || |||||||| |||| ||||| |||| || Sbjct 45079 ATTAATGAACCGACAGCTGCTGCGATTGCCTATGGCATTGACAA 45122 >seq1147 Length=79845 Score = 105 bits (116), Expect = 5e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 550313 CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGT 550372 |||||| | |||||| || | || | ||||| || | || ||||| |||| | | Sbjct 39686 CAATTTGCTCCAGAAGAAGTCTCRGCCATGGTGTTGACCAARATGAAGCAAATATCTGAA 39745 Query 550373 GCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 | | |||||| ||| || || || || | || || || || || ||||| ||| Sbjct 39746 GGATACATTGGTCGAGAGGTGTTTGACGCTGTTGTGACAGTCCCGGCTTACTTTAACGAC 39805 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492 | ||||||||||| || || |||||||| |||||||| |||| || | ||||| Sbjct 39806 GCGCAACGTCAAGCGACCAAGGATGCTGGTACCATTGCTGGTCTTACGGTGCAACGTATC 39865 Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || |||||||| || |||||||| |||| ||||| |||| || Sbjct 39866 ATTAATGAACCGACAGCTGCTGCGATTGCCTATGGCATTGACAA 39909 >seq3451 Length=32896 Score = 93.3 bits (102), Expect = 3e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || ||||| || || ||||| ||||| ||||||||||||||||| || ||||| ||| Sbjct 17748 ACAGTACCGGCTTACTTTAACGACTCCCAACGTCAAGCTACTAAGGACGCTGGTAAAATT 17689 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || | || || || || ||||| || ||||| |||||||| ||||| || || Sbjct 17688 GCGGGCCTGGACGTCCTCCGGATCATCAACGAGCCTACAGCTGCTGCTCTTGCCTACGG 17630 >seq213 Length=119585 Score = 93.3 bits (102), Expect = 3e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || ||||| || || ||||| ||||| ||||||||||||||||| || ||||| ||| Sbjct 100160 ACAGTACCGGCTTACTTTAACGACTCCCAACGTCAAGCTACTAAGGACGCTGGTAAAATT 100219 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || | || || || || ||||| || ||||| |||||||| ||||| || || Sbjct 100220 GCGGGCCTGGACGTCCTCCGGATCATCAACGAGCCTACAGCTGCTGCTCTTGCCTACGG 100278 >seq3954 Length=12134 Score = 86.0 bits (94), Expect = 5e-11 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| ||||| ||||| |||| || ||||| ||||||||||| ||||||||| | Sbjct 11752 TGTGTCGGTGTGTGGCAGAATGACCGTGTAGAAATCATTGCCAATGACCAAGGTAACCGC 11811 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || || ||||| | |||||||| || || | | | |||||||||| || || Sbjct 11812 ACCACGCCGTCCTATGTGGCATTCACGGACACGGAGCGTCTTATTGGTGATGCCGCCAAG 11871 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAG- 550203 | |||| | || || | ||| || | ||||| || || || | ||||| | Sbjct 11872 AACCAAGTCGCTATGAACGCCCACAACACGGTGTTTGACGCCAAGCGCCTGATTGGTCGC 11931 Query 550204 AAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 ||||| | || ||| || || || || | ||| || ||||| ||| Sbjct 11932 AAGTTCT-CGGACCCGATCGTGCAAGCTGACACGAAACACTGGCCGTTC 11979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029083668692350