Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_016566.1 Length=44077 Score E Sequences producing significant alignments: (Bits) Value seq2439 86.0 2e-12 >seq2439 Length=1004 Score = 86.0 bits (94), Expect = 2e-12 Identities = 230/352 (65%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 18504 TTACGGAGATTATCGACGCCCGCCTGCGATACCCGCTAACCGCGCTGTTGTTCGTGGAGT 18563 |||| ||| | |||||||| | || |||||| || |||||| | | | | |||| Sbjct 361 TTACCGAGGTGATCGACGCGAAGATCCGCTACCCGAACACGGCGCTGCTCTACATCGAGT 302 Query 18564 TCGACGCTAAGGCTTTCCAGAATATCCCGCGCGTGTCAATCAAGTGCAAAGGTCGCAAGG 18623 | ||| || |||| | ||||||| ||| | | || |||| ||| Sbjct 301 TTTCCGCCGAGCAGTTCCGCAGTATCCCGGCCGTAACGGTTGAGACCAAATTGAAGAAGA 242 Query 18624 TGTTGGTCCCGAACAACTACGACCCGATTAATCACACCTATTCGGGGGACTGGGATGGCA 18683 || ||| |||| |||||||||||| | | | | || || | ||||| |||| Sbjct 241 TGCAGGTGCCGAGCAACTACGACCCTGTGTCGCGCTCGTACAGTGGCGTTTGGGACGGCA 182 Query 18684 CGTTTAAACGCGCATGGACGGATAACCCTGCGTGGCACTGGTACGATATTTGTATTACTG 18743 | ||||| | || ||||| || ||||||| ||| ||||| ||| || ||| Sbjct 181 CCTTTAAGCAGGCCTGGACCGACAACCCTGTCTGGATGACCTACGACATTACCATCGCTG 122 Query 18744 AGCGCTTTGGCCTCGGTCGTCGTATCAAACCGCAAATGCTAAACCGATACGCGCTTTACC 18803 | ||||||||||| || ||||| ||||| ||| ||| | || || | ||| |||| Sbjct 121 ACCGCTTTGGCCTGGGCCGTCGCATCAAGCCGTGGATGGTGGACAAATGGGAGCTGTACC 62 Query 18804 AGGTTGCGCAGCGCTGCGATCAGCTGGTCAGCGACGGCAACGGCGGGCAGGA 18855 | || |||| |||||| ||| |||| ||||| || || || ||||| Sbjct 61 GGATTTCGCAATACTGCGACCAGTTGGTGCCGGACGGGAAGGGTGGCCAGGA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140918080969770