Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1101 129 7e-25 seq446 127 2e-24 >seq1101 Length=81374 Score = 129 bits (142), Expect = 7e-25 Identities = 296/440 (67%), Gaps = 8/440 (2%) Strand=Plus/Minus Query 37197 CCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttttt 37256 || ||||| | ||| || | || || || ||| | | || ||||| | ||| | ||| Sbjct 7556 CCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCAGGCATAAGACCACGTTTC 7497 Query 37257 ttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAAGAAAATACCTTCAACTGCTGCAAA 37315 || | |||||| || | ||| ||| |||| || |||||||| || || || | ||||| Sbjct 7496 TTCAGCCAAAAGATGGA-GCAGAAGGATCCGGAGAAGAAAATGCCCTCCACCGAGGCAAA 7438 Query 37316 TGCTACAAGACGTGTACCGAAAGTTGA-ACTATAA--TCAGAAATCCAtttttttGTCCA 37372 || | ||||| || | | ||| ||| ||| | ||| || || ||| Sbjct 7437 CGCCAATAGACGCTCTGCGTACGATGACACTCGCGGGTCACA---CCACTTGAGTGCCCA 7381 Query 37373 ATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttC 37432 || || || ||| |||||| || || ||||| || | ||| || || || Sbjct 7380 ATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACGCAGCAGATGGTCCTTCTC 7321 Query 37433 TTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTC 37492 | || || | ||||| |||||||| || | ||| | || ||||||||||| || Sbjct 7320 TCCAGCATTCTTGATATATGTATCAATAAGCAGCGAATAGACCTCCGAGTGAATATTCTC 7261 Query 37493 AATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAA 37552 ||| || |||||||| || || || || | |||||||| || ||| || ||||| ||| Sbjct 7260 AATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTACTTGCACTTCGTTGCTAAA 7201 Query 37553 CCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATA 37612 || | || | |||||| || || || ||||| || |||||||| || ||||| |||| Sbjct 7200 ATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCAAAAAAGGCAAGCACATG 7141 Query 37613 TTTTATAAAATGTCTTTCAT 37632 || | ||||| | ||||| Sbjct 7140 CTTCACGAAATGGCGTTCAT 7121 >seq446 Length=286769 Score = 127 bits (140), Expect = 2e-24 Identities = 295/440 (67%), Gaps = 8/440 (2%) Strand=Plus/Minus Query 37197 CCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttttt 37256 || ||||| | ||| || | || || || ||| | | || ||||| | ||| | ||| Sbjct 150986 CCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGACCAGGCATAAGACCACGTTTC 150927 Query 37257 ttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAAGAAAATACCTTCAACTGCTGCAAA 37315 || | |||||| || | ||| ||| |||| || |||||||| || || || | ||||| Sbjct 150926 TTCAGCCAAAAGATGGA-GCAGAAGGATCCGGAGAAGAAAATGCCCTCCACCGAGGCAAA 150868 Query 37316 TGCTACAAGACGTGTACCGAAAGTTGA-ACTATAA--TCAGAAATCCAtttttttGTCCA 37372 || | ||||| || | | ||| ||| ||| | ||| || || ||| Sbjct 150867 CGCCAATAGACGCTCTGCGTACGATGACACTCGCGGGTCACA---CCACTTGAGTGCCCA 150811 Query 37373 ATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttC 37432 || || || ||| |||||| || || ||||| || | ||| || || || Sbjct 150810 ATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACGCAGCAGATGGTCCTTCTC 150751 Query 37433 TTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTC 37492 | || || | ||||| |||||||| || | ||| | || ||||||||||| || Sbjct 150750 TCCAGCATTCTTGATATATGTATCAATAAGCAGCGAATAGACCTCCGAGTGAATATTCTC 150691 Query 37493 AATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAA 37552 ||| || |||||||| || || || || | |||||||| || ||| || || || ||| Sbjct 150690 AATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTACTTGCACTTCRTTGCTAAA 150631 Query 37553 CCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATA 37612 || | || | |||||| || || || ||||| || |||||||| || ||||| |||| Sbjct 150630 ATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCAAAAAAGGCAAGCACATG 150571 Query 37613 TTTTATAAAATGTCTTTCAT 37632 || | ||||| | ||||| Sbjct 150570 CTTCACGAAATGGCGTTCAT 150551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592287073100600