Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1113 105 5e-18 >seq1113 Length=254142 Score = 105 bits (116), Expect = 5e-18 Identities = 382/590 (65%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 || || || ||||||| ||| |||| || ||||| || | | |||| ||||| || Sbjct 12979 AGTGGCTCTACGTGATTCAGATAGATATGCGCGTCACCGATGACATGGATGAACTCGCCA 13038 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 | || || || || || || | || ||| || | | |||||||| || ||| Sbjct 13039 GCTTTCAGTCCTACCACTTGCGCGACCAAACGCGTCAGCAACGCATAGCTGGCAATATTA 13098 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 29982 || || || || || || || || |||| | ||||| | ||| ||||| || || | Sbjct 13099 AACGGCACGCCTAGTCCAATATCGGCCGAGCGTTGGTACATCTGGCACGACAGTTCATCA 13158 Query 29983 TCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 || ||||||||||||||| | ||||||||||||| | ||||| || || Sbjct 13159 TCCGCCACGTAAAACTGACAAAACATGTGGCACGGAGGCAATGCCATTTCATTCAGATCA 13218 Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGG 30099 || ||||| || ||| | || || | ||| | || || | | || | || Sbjct 13219 GCCGGATTCCAAGCTGACAGCACAATTCGGCGGTCATTGGGATTCGTGCGGAGCTTATGG 13278 Query 30100 TCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT 30158 ||| || || ||||| ||||| || || ||||| || ||| ||||| Sbjct 13279 ATCACCTCG----GCAAGCTGGTCCACGCCTTGGCCGCTATAGTCGGCGTGCATATCCGT 13334 Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 ||||| || || ||||| | ||| || || || || |||||||| || |||||| | || Sbjct 13335 GTACTTGGCACCAAAATGGCGCCATTGAAAACCATAAACCGGTCCAAGATCTCCCACCTC 13394 Query 30219 CCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | ||| || | || || ||||||| | || | || || ||| ||||||| || | Sbjct 13395 GC-GTGACTGCAGTCCTCTACTGTCCAAGTACTCGCGCGACCCATTGCCGTCCCAAATGT 13453 Query 30278 TTACCCCCTTCT-CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30336 || ||| | | || ||| | | || ||| || || | |||||||||| | Sbjct 13454 GAACATTCTTTTGCTGA-AGCGTGTGCGCATTCGTGTCACCACTAATAAACCACAGCAAC 13512 Query 30337 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 ||||| | || | |||||| ||| |||| ||||| || | ||||| Sbjct 13513 TCCTCGGCCACACCACGCCAAAACACCTTCTTCGTCGTCAGCAACGGAAA 13562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408597605191595