Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq1576 214 6e-51 >seq1576 Length=1476 Score = 214 bits (236), Expect = 6e-51 Identities = 363/522 (70%), Gaps = 7/522 (1%) Strand=Plus/Minus Query 48566 ATCCTCAGCGATACCGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGCTGAC 48625 ||||| ||| || || | ||| || ||| ||||| | ||||| | || || ||| Sbjct 589 ATCCTTGCCGACACAGGGACCATTCACAACGAAGACCATGCCCACCTACTGGATGCGGAC 530 Query 48626 CTCTGCTTCATGTGGGCGTC--CGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTCGGCC 48683 || || ||||||||||||| ||| ||||| ||| | || || ||||| |||| Sbjct 529 ATCCGCGTCATGTGGGCGTCGTCGAGC--TTCGCCAAGCATGGTAGGACAGTCCTGGGCC 472 Query 48684 AAGCCGAGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGA 48743 | |||||||| || | ||||||| ||||| |||||||||||| | ||||||||||||| Sbjct 471 AGGCCGAGCAAGTGGGGTTCCGCGCTGGTGGCTGGCAGAAAGCCCGGATGGAACAGCAGA 412 Query 48744 TGTATGAATGGTTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCT 48803 || ||| |||||||| | | ||| ||||||||||| || || || || |||||| Sbjct 411 TGCGTGATTGGTTCGGCGACGTGCCGGCCTTCATCATCACCCTAGCTGCGGACTACTGCG 352 Query 48804 CACAATGCAATGACCTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCAC 48863 | || |||| ||| ||| ||||| || ||||| ||||||||||| || |||||||| | Sbjct 351 CTCAGTGCAGCGACACCGACTTCTGTGCCCTGGTTGAGCATGAGCTCTATCACATCGCCC 292 Query 48864 AGGCCACCGATGATTTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCATCCATTGCTTA 48923 | |||| ||| | | ||| ||| || | ||| || | ||| ||| |||| Sbjct 291 ATGCCATGGATAAGTACGGTCAGCCAGCATTTACCAA--GGATGGCGCACCCA-AGCTTG 235 Query 48924 CACTGCGCGGCCACGACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGCCAGCA 48983 ||||| ||||| ||||| || ||| |||| || || || || |||||||| ||| Sbjct 234 AGATGCGCTCACACGATGTCGAGGAGTTCGTTGGCGTGGTCCGCCGCTACGGTGCAAGCC 175 Query 48984 AAGAAGTACAGGAGCTTGTTGATGCGGCCAAAGCGCCAGCAGAAGTGGCTCACATCGATA 49043 || || || | | | || ||||| || || || || || |||| | | | | Sbjct 174 CTGACGTTCAAGCGTTGGTGGATGCTGCAAACAGTCCTGCCGAGGTGGGGAAATTGAACA 115 Query 49044 TAGCCAGGTCATGCGGCACATGCATGTTAAAACTGGCCTAAC 49085 || | ||| | ||||| || || || | | | |||||| || Sbjct 114 TATCGAGGGCCTGCGGAACCTGTCTGCTCAGATTGGCCTGAC 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157042112169540