Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1101 165 2e-35 seq446 165 2e-35 >seq1101 Length=81374 Score = 165 bits (182), Expect = 2e-35 Identities = 372/552 (67%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || ||||||||| |||||| ||| || || || || || ||| |||| ||||||| |||| Sbjct 7577 CAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGA 7518 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||| | || | | || ||||| || || | ||| || || |||||||| Sbjct 7517 CCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAA 7458 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGA 48309 ||||||||||| | || ||||| || | |||| || | || | | || | | | Sbjct 7457 ATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTCGCGGGTCA 7398 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 | ||| || ||||| | || ||||| |||| ||||| ||||| || ||||| || Sbjct 7397 CA-CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACG 7339 Query 48370 GA--AGA-GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAG---TGAGCAGCTTTGC 48423 | ||| | | ||| ||| || || | | | ||| ||| | |||||| | Sbjct 7338 CAGCAGATGGTCCTT---CTCTCCAGCATTCTTGATATATGTATCAATAAGCAGC---GA 7285 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 || | ||| ||||| | |||||| || || ||||| |||||||||||| | || || Sbjct 7284 ATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTC 7225 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | || |||||||| || || || || || || || || || ||||| Sbjct 7224 AGGTACTTGCACTTCGTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCT 7165 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || ||||| |||||||| ||||| || | ||||||||| || |||| ||||| | Sbjct 7164 GGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTTGTC 7105 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| ||| | || | | ||||||| | || || | |||||||| || || || Sbjct 7104 CCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCTCGGC 7045 Query 48664 TTTTTTGTACAT 48675 || |||||||| Sbjct 7044 CTTCTTGTACAT 7033 >seq446 Length=286769 Score = 165 bits (182), Expect = 2e-35 Identities = 372/552 (67%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || ||||||||| |||||| ||| || || || || || ||| |||| ||||||| |||| Sbjct 151007 CAAGCAAAGTCCGTGTGCATGCCCTCATCACGACTAATTAGCTCGTTTGAGAAGCTGAGA 150948 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||| | || | | || ||||| || || | ||| || || |||||||| Sbjct 150947 CCAGGCATAAGACCACGTTTCTTCAGCCAAAAGATGGAGCAGAAGGATCCGGAGAAGAAA 150888 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGA 48309 ||||||||||| | || ||||| || | |||| || | || | | || | | | Sbjct 150887 ATGCCCTCCACCGAGGCAAACGCCAATAGACGCTCTGCGTACGATGACACTCGCGGGTCA 150828 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 | ||| || ||||| | || ||||| |||| ||||| ||||| || ||||| || Sbjct 150827 CA-CCACTTGAGTGCCCAATTGGCTTTCTTTTTGACACATGGTATCGTATCAATGGCACG 150769 Query 48370 GA--AGA-GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAG---TGAGCAGCTTTGC 48423 | ||| | | ||| ||| || || | | | ||| ||| | |||||| | Sbjct 150768 CAGCAGATGGTCCTT---CTCTCCAGCATTCTTGATATATGTATCAATAAGCAGC---GA 150715 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 || | ||| ||||| | |||||| || || ||||| |||||||||||| | || || Sbjct 150714 ATAGACCTCCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTC 150655 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | || |||||||| || || || || || || || || || ||||| Sbjct 150654 AGGTACTTGCACTTCRTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCT 150595 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || ||||| |||||||| ||||| || | ||||||||| || |||| ||||| | Sbjct 150594 GGCTGCAAAAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTTGTC 150535 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| ||| | || | | ||||||| | || || | |||||||| || || || Sbjct 150534 CCAGTCCTTGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCTCGGC 150475 Query 48664 TTTTTTGTACAT 48675 || |||||||| Sbjct 150474 CTTCTTGTACAT 150463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931486048697600