Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq1576 224 3e-54 >seq1576 Length=1476 Score = 224 bits (248), Expect = 3e-54 Identities = 276/375 (74%), Gaps = 3/375 (1%) Strand=Plus/Minus Query 29494 CCAAAAAAGGCAGGACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGAT 29553 |||| | || |||||||| || |||||||| || | || | | || || || || | Sbjct 498 CCAAGCATGGTAGGACAGTCCTGGGCCAGGCCGAGCAAGTGGGGTTCCGCGCTGGTGGCT 439 Query 29554 GGCAAAAGGCCCGAATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCA 29613 |||| || ||||| ||||||||||||||| ||| |||||||| || ||||| ||||| Sbjct 438 GGCAGAAAGCCCGGATGGAACAGCAGATGCGTGATTGGTTCGGCGACGTGCCGGCCTTCA 379 Query 29614 TCATCACGCTGGCTGCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCTGCGCACTGG 29673 ||||||| || ||||| ||||| ||| || ||| ||| |||||||| || |||| Sbjct 378 TCATCACCCTAGCTGCGGACTACTGCGCTCAGTGCAGCGACACCGACTTCTGTGCCCTGG 319 Query 29674 TAGAGCATGAGCTTTATCACATCGCCCAAGAAGTGGATGAGTTTGGCTCACCGAAGTTTT 29733 | ||||||||||| |||||||||||||| | ||||| ||| || ||| | | ||| Sbjct 318 TTGAGCATGAGCTCTATCACATCGCCCATGCCATGGATAAGTACGG-TCAGCCAGCATTT 260 Query 29734 ACCGCGACTCAGGTAAGCCGAAGCTTTGCATGCGCGGACATGATGTTGAGGAATTCGTTG 29793 ||| | | || || |||||| |||||| ||| ||||| ||||| ||||||| Sbjct 259 ACCAAGGAT--GGCGCACCCAAGCTTGAGATGCGCTCACACGATGTCGAGGAGTTCGTTG 202 Query 29794 GCGTTGTCCGTCGATATGGCGCAAGCGCTGATGTCCAGGAATTAGTAGATGCGGCAAATA 29853 |||| ||||| || || || |||||| |||| || || | || || ||||| ||||| | Sbjct 201 GCGTGGTCCGCCGCTACGGTGCAAGCCCTGACGTTCAAGCGTTGGTGGATGCTGCAAACA 142 Query 29854 AACCAGCAGAGGTGG 29868 || || ||||||| Sbjct 141 GTCCTGCCGAGGTGG 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152226341787390