Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2222 122 6e-22 seq3695 107 1e-17 seq1147 105 4e-17 seq852 100 2e-15 seq3417 95.1 8e-14 seq3954 89.7 3e-12 >seq2222 Length=488333 Score = 122 bits (134), Expect = 6e-22 Identities = 358/548 (65%), Gaps = 9/548 (2%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || ||||| | || || || ||| ||||| | ||| ||||| |||| ||||| Sbjct 93104 GGCATTGACCTCGGCACGACCTACTCCTGTGTCGGTGTGTGGCAGAATGACCGTGTAGAR 93163 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || |||||||||||||||||||| | || || || || ||||| | || || || || Sbjct 93164 ATCATTGCCAATGACCAAGGTAACCGCACCACGCCGTCCTATGTGGCATTCACGGACACG 93223 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || | ||||||||| ||||| || || | |||| || || | || || | Sbjct 93224 GAGCGTCTTATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACGCCCACAACACGGTG 93283 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 ||||| || || | |||||||||| || || || | | || ||| |||| | | Sbjct 93284 TTTGACGCCAAGCGCCTGATTGGTCGCAAGTTCTCGGACCCGATCGTGCAAGCTGACACG 93343 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAGAAG--CAA 474629 || ||||| || ||||| | | || || ||| || || | || || ||| Sbjct 93344 AAACACTGGCCGTTCAAGGTCACAGCTGGTGCCGGTGACAAGCCGCAAATTACAGTGCAA 93403 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 | || | || || | || | || || || || | || || || ||||| || Sbjct 93404 TTCAAG--GGCGAGTCGAAG-ACGTTCCAGCCTGAGGAGATCTCGTCTATGGTGTTGATT 93460 Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 || ||| | ||| | | | | || | || || | ||||||| |||||| Sbjct 93461 AAGATGCGCGAGGTGGCGGAGGCTTTTATYGGCAAGGAGGTGAAGAATGCAGTGATTACT 93520 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| ||||| || || ||||| || ||||||||||| || || || Sbjct 93521 GTACCGGCCTATTTCAATGACTCGCAGCGTCAGGCCACTAAAGATGCCGGTGCCATCGCT 93580 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || || ||||| | ||||| ||||| || || ||||| || || |||| |||||||| Sbjct 93581 GGACTCAATGTGCTTCGTATCATTAACGAGCCGACAGCTGCTGCCATTGCCTATGGTCTG 93640 Query 474869 GATAAGAA 474876 || || || Sbjct 93641 GACAAAAA 93648 Score = 91.5 bits (100), Expect = 1e-12 Identities = 176/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 ||||| || | || || || ||| || || | ||| ||||| |||| || || Sbjct 68157 GGTATCGACCTGGGTACGACGTACTCGTGCGTTGGTGTCTGGCAGAATGACCGTGTCGAG 68216 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || |||||||||||||| || ||| | || || || || ||||| | ||||| || ||| Sbjct 68217 ATCATTGCCAATGACCAGGGAAATCGCACGACGCCGTCGTATGTGGCCTTTACGGACACT 68276 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || | ||||||||| |||||||| || | |||| || ||| | ||||| | Sbjct 68277 GAGCGTCTTATTGGCGATGCTGCCAAGAACCAAGTAGCCATGAATGCCCACAATACGGTG 68336 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 ||||| | ||| | ||||| || || || ||| |||| || || || || || Sbjct 68337 TTTGACGTCAAACGCTTGATCGGGCGCAAATTTACTGATTTAGAAGTGCAGTCGGACATT 68396 Query 474575 CGTCATTGGCCTTTTAAGGT 474594 | || ||||| || ||||| Sbjct 68397 AGGCACTGGCCGTTCAAGGT 68416 >seq3695 Length=154351 Score = 107 bits (118), Expect = 1e-17 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 474650 CAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGC 474709 |||||| | || ||| || | || | ||||| || |||||||||| |||| | Sbjct 44899 CAATTTGCTCCAGAAGAAGTCTCGGCCATGGTGTTGACCAAAATGAAGCAAATATCTGAA 44958 Query 474710 TCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGAT 474769 ||| |||| | ||| || ||| || || | || || || || || ||||| || Sbjct 44959 GGATACATTGGTCGAGAGGTGTTTGACGCTGTTGTGACAGTCCCGGCTTACTTTAACGAC 45018 Query 474770 TCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATT 474829 | ||||||||||| || || ||||| || | ||||| ||||||| || |||||| Sbjct 45019 GCGCAACGTCAAGCGACCAAGGATGCTGGTACCATTGCTGGTCTTACGGTGCAACGTATC 45078 Query 474830 ATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||||||||| ||||| || || |||| ||||| |||| ||||| Sbjct 45079 ATTAATGAACCGACAGCTGCTGCGATTGCCTATGGCATTGACAAGAA 45125 >seq1147 Length=79845 Score = 105 bits (116), Expect = 4e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 474650 CAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGC 474709 |||||| | || ||| || | || | ||||| || |||| ||||| |||| | Sbjct 39686 CAATTTGCTCCAGAAGAAGTCTCRGCCATGGTGTTGACCAARATGAAGCAAATATCTGAA 39745 Query 474710 TCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGAT 474769 ||| |||| | ||| || ||| || || | || || || || || ||||| || Sbjct 39746 GGATACATTGGTCGAGAGGTGTTTGACGCTGTTGTGACAGTCCCGGCTTACTTTAACGAC 39805 Query 474770 TCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATT 474829 | ||||||||||| || || ||||| || | ||||| ||||||| || |||||| Sbjct 39806 GCGCAACGTCAAGCGACCAAGGATGCTGGTACCATTGCTGGTCTTACGGTGCAACGTATC 39865 Query 474830 ATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||||||||| ||||| || || |||| ||||| |||| ||||| Sbjct 39866 ATTAATGAACCGACAGCTGCTGCGATTGCCTATGGCATTGACAAGAA 39912 >seq852 Length=2526 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||| || || ||||| ||||| || || ||||| || ||||||||||| Sbjct 202 GCAGTGATTACTGTACCGGCCTATTTCAATGACTCGCAGCGTCAGGCCACTAAAGATGCC 261 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || || || || || ||||| | ||||| ||||| || || ||||| || || || Sbjct 262 GGTGCCATCGCTGGACTCAATGTGCTTCGTATCATTAACGAGCCGACAGCTGCTGCCATT 321 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || |||||||| || || || Sbjct 322 GCCTATGGTCTGGACAAAAA 341 >seq3417 Length=183207 Score = 95.1 bits (104), Expect = 8e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||||||| | || || || ||| ||||| | ||| ||| || | ||| | || Sbjct 14376 ATTGGTATTGATCTCGGTACCACGTACTCGTGTGTGGGTGTGTGGAAAGACGGTCAGGTG 14435 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || ||||||||| | || || | || || || |||| ||| | || | |||| Sbjct 14436 GAGATCATTGCCAATAGTGAGGGAAACCGTACGACCCCGTCATGGGTTGCATTCAATGAA 14495 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 | ||||| ||||||||| || |||||||| |||||| || ||| || || || Sbjct 14496 AGTGAACGTCTTATTGGTGAAGCTGCTAAGATTCAAGCAGCTGGGAATGCTACGAACACG 14555 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGAT 474553 | |||||||| ||| | | ||||| || | ||| |||| Sbjct 14556 GTGTTTGATGCAAAACGTATTATTGGACGCAGCTTTAGTGAT 14597 >seq3954 Length=12134 Score = 89.7 bits (98), Expect = 3e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || ||||| | || || || ||| ||||| | ||| ||||| |||| |||||| Sbjct 11725 GGCATTGACCTCGGCACGACCTACTCCTGTGTCGGTGTGTGGCAGAATGACCGTGTAGAA 11784 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || |||||||||||||||||||| | || || || || ||||| | || || || || Sbjct 11785 ATCATTGCCAATGACCAAGGTAACCGCACCACGCCGTCCTATGTGGCATTCACGGACACG 11844 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || | ||||||||| ||||| || || | |||| Sbjct 11845 GAGCGTCTTATTGGTGATGCCGCCAAGAACCAAG 11878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268006977169220