Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3828 134 7e-27 >seq3828 Length=141882 Score = 134 bits (148), Expect = 7e-27 Identities = 318/476 (67%), Gaps = 10/476 (2%) Strand=Plus/Plus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 |||||||| |||||| ||| | |||| || || | |||||| ||||| ||| Sbjct 95158 TTTGGACAAAATAAACTCCACTTGCCATTGGCTTCCACCCGTTTCATAAACAAATCAGGA 95217 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 | ||| | || || ||||| || | ||||| | || || ||||| ||||| Sbjct 95218 ACCCAAAGGGCGTAGAATAAGTCACGCGCTCGGTGTAGCTCATTACCGTGGTTCTTACGA 95277 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 || || | || ||||| | || | ||||| || || || || | ||||||| ||| Sbjct 95278 AGGTCCAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATACAGCAAAAGACCCT 95337 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 || | ||| ||||||||||| || ||||||| || || || || || || |||||| Sbjct 95338 TTGCGTTTACCTCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAACACACGCAACATA 95397 Query 26129 GGAACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGAT--CTA 26185 |||| | |||| ||| || | || || |||| | |||| | |||| | || Sbjct 95398 GGAA-TGATCCCGTTAGAGGACCCATTAGTGCCACGAATAT----AACTGTTAGTGGCTC 95452 Query 26186 ATATCGTGAGCAT--GAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 ||| || |||| || || |||||||| ||||| || ||||| |||||| | | Sbjct 95453 GTATGTTGTGCATACTGATGCCAATTCCACCCGCCCACTTGGAAATGCATGCACATTGTT 95512 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAG 26303 | ||| || |||| |||| || |||| | | ||| ||| |||||| || || | Sbjct 95513 TCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAAARCACGAGG 95572 Query 26304 ATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAA 26359 | | ||| | | ||| ||||| | |||||| || || || || ||||| ||| || Sbjct 95573 ACAGTTGGGGACGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGCGTAAAA 95628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253027618041125