Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1101 140 4e-28 seq446 140 4e-28 seq3828 120 4e-22 >seq1101 Length=81374 Score = 140 bits (154), Expect = 4e-28 Identities = 173/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 ||||| | || |||||||| | | ||||| || || |||||| | || |||| |||| Sbjct 7342 GCCATTGATACGATACCATGTGTCAAAAAGAAAGCCAATTGGGCACTCAAGTGGTGTGAC 7401 Query 65056 ACAA-AGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | ||| || || | ||| ||||| || || |||||||| | |||||||| || || Sbjct 7402 CCGCGAGTGTCA-TCGTACGCAGAGCGTCTATTGGCGTTTGCCTCGGTGGAGGGCATTTT 7460 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 ||||||||| || |||||| | || | |||| ||||||| || ||||| ||||| || || Sbjct 7461 CTTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAGAAACGTGGTCTTATGCCTGGTCT 7520 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 |||||||||| || || ||| || |||||||| | ||| ||| ||||| Sbjct 7521 CAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGCACACGGACTTTGC 7574 >seq446 Length=286769 Score = 140 bits (154), Expect = 4e-28 Identities = 173/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 ||||| | || |||||||| | | ||||| || || |||||| | || |||| |||| Sbjct 150772 GCCATTGATACGATACCATGTGTCAAAAAGAAAGCCAATTGGGCACTCAAGTGGTGTGAC 150831 Query 65056 ACAA-AGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | ||| || || | ||| ||||| || || |||||||| | |||||||| || || Sbjct 150832 CCGCGAGTGTCA-TCGTACGCAGAGCGTCTATTGGCGTTTGCCTCGGTGGAGGGCATTTT 150890 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 ||||||||| || |||||| | || | |||| ||||||| || ||||| ||||| || || Sbjct 150891 CTTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAGAAACGTGGTCTTATGCCTGGTCT 150950 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 |||||||||| || || ||| || |||||||| | ||| ||| ||||| Sbjct 150951 CAGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGCACACGGACTTTGC 151004 >seq3828 Length=141882 Score = 120 bits (132), Expect = 4e-22 Identities = 635/995 (64%), Gaps = 31/995 (3%) Strand=Plus/Minus Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 |||||||| ||||| |||||| || | || | || | || || || ||||| | || Sbjct 95660 TTGGAGACGTACGAGTTGATGTCTCAGAAGTTTTTT-ACGCATGCGACGCCAACGTTGTT 95602 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 |||||||| || || | || || ||||| || || | | || | |||| || Sbjct 95601 TAATGCTGGAACTCCTCGTCCCCAACTGTCCTCGTGYTTTTTACTAGCTATGCAGGATGA 95542 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 || || | ||||| |||| || | | | ||||| || || |||||||| || Sbjct 95541 TTCGATTGAAGGTATTTATGACACATTGAAACAATGTGCATGCATTTCCAAGTGGGCGGG 95482 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 || ||||| || || || | | |||||| ||| | |||||| || || || Sbjct 95481 TGGAATTGGCATCAGTATGCACAACATACGAGCCACTAACAGTTATATTCGTGGCACTAA 95422 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| || | || || ||||| ||| | || || ||||||| |||||| || || || Sbjct 95421 TGGGTCCTCTAACGGGATCATTCCTATGTTGCGTGTGTTTAACGACACAGCCCGATACGT 95362 Query 75571 AAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 | |||| || || ||||| ||||| | || || |||||||| || |||||||| Sbjct 95361 GGACCAAGGTGGAGGTAAACGCAAAGGGTCTTTTGCTGTATACTTGGAGCCGTGGCATGC 95302 Query 75628 CGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG-TA 75686 ||| | | ||||| || || | || ||||| ||| | | || | | | | Sbjct 95301 CGACGTGTTTGAGTTTCTGGACCTTCGTAAGAACCACGGTAATG-AGCTACACCGAGCGC 95243 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | || | || | |||| ||| |||| || | || ||||| ||||| || | || Sbjct 95242 GTGACTTATTCTACGCCCTTTGGGTTCCTGATTTGTTTATGAAACGGGTGGAAGCCAATG 95183 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTGAG 75805 | | ||| | | || |||||| || | ||||| | ||| | ||| || | ||| || Sbjct 95182 GCAAGTGGAGTTTATTTTGTCCAAACGAAGCACCTGCTCTTTACGAGTGCTG-GGGAGAC 95124 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGACT-GT 75861 ||||| || || || | |||||| ||| ||| || | || ||| | | | | Sbjct 95123 GAGTTCGAGGCGCTTTTTGAAAAGTACGAACGGGAAGGACGTGCTCGCAAAACAATTAAT 95064 Query 75862 AC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAAAT-CACAGACGGAGACTGGAACACCA 75919 | |||| || |||| | | ||| | || | |||| ||||| || ||| Sbjct 95063 GCACAGCAGCTATGGTTTAGCA------TCTTAGATGCGCAGATTGAGACGGGCGTACCG 95010 Query 75920 TATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATC 75979 | |||||||| ||||| || |||| ||| ||||| ||||| | || || ||| Sbjct 95009 TTTATGCTTTTTAAGGACGCGGTTAACCGTAAGTCCAACCAGCAGAATCTTGGCACGATC 94950 Query 75980 AAGAGCTCAAATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 || | | ||| ||| || | | ||||| || | |||| |||||| Sbjct 94949 -CGATCCAGTAACTTGTGCTGTGAGGTGATGGAGTATACGTCGCCGAATGAAGTGGCTGT 94891 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 ||||| ||||| || | || || ||||| | ||| |||| | | | ||||| Sbjct 94890 GTGCAACTTGGCGTCTGTGGCTCTACCAAAATTTGT---TGAA---AACGGTGCCTTTGA 94837 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 || | || || |||| | || ||| | || ||| ||||| ||| || || || Sbjct 94836 CTACAAGAAGCTGTATGATGTGACGAAGGTGGTCACCCGTAATCTTAACAAGGTTATCGA 94777 Query 76159 CAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 | || | || || |||| ||| || | || |||||||||||| ||| | ||| | | Sbjct 94776 CGTCAACTACTACCCGGTTGCAGA-GGCTCAAACGTCTAATATGCGCCACCGCCCTGTGG 94718 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT 76252 || | |||||||| ||||| || |||| ||| ||| Sbjct 94717 GTATTGGTGTTCAGGGTCTGGCCGATGCATTCATT 94683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596539659663200