Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3828 120 9e-22 seq3573 118 3e-21 seq3395 118 3e-21 seq3089 118 3e-21 seq3639 104 7e-17 seq3526 104 7e-17 seq2450 84.2 6e-11 seq1006 84.2 6e-11 >seq3828 Length=141882 Score = 120 bits (132), Expect = 9e-22 Identities = 328/502 (65%), Gaps = 9/502 (2%) Strand=Plus/Plus Query 156027 GGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGA 156083 ||||||| || | ||||||| || || | || || ||| || || || || || Sbjct 95311 GGCTCCAAGTATACAGCAAAAGACCCTTTGCGTTTACCTCCACCTTGGTCCACGTATCGG 95370 Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG 156143 || || | || || |||| | ||||||||| || || || || | ||||| || || Sbjct 95371 GCTGTGTCGTTAAACACACGCAACATAGGAATGATCCCGTTAGAGGACCCATTAGTGCCA 95430 Query 156144 CGAATATGCGAACC---AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGAC 156200 ||||||| ||| || | || | || || ||| | ||||| ||||| | | Sbjct 95431 CGAATAT---AACTGTTAGTGGCTCGTATGTTGTGCATACTGATGCCAATTCCACCCGCC 95487 Query 156201 CATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCT 156260 || || ||||| || |||| || | || | ||||||||||||| |||||||| Sbjct 95488 CACTTGGAAATGCATGCACATTGTTTCAATGTGTCATAAATACCTTCAATCGAATCATCC 95547 Query 156261 TCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGT 156320 | ||| | ||||| | | ||||| | ||| || || || |||||||| || || | Sbjct 95548 TGCATAGCTAGTAAAAARCACGAGGACAGTTGGGGACGAGGAGTTCCAGCATTAAACAAC 95607 Query 156321 GTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTC 156380 || || || ||||| ||||| |||| | |||||| | ||||| |||||| | | Sbjct 95608 GTTGGCGTCGCATGCGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCT 95667 Query 156381 TCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCT 156440 | | ||| | ||| |||| | | || | ||| | || || || ||||| Sbjct 95668 TGGATATTGCTCTTGTGGATACCTAACGCAACGCGCATAATTAAYTGTTGCGGCCGCTCC 95727 Query 156441 ACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAA 156500 || | |||| || || | ||| ||| | || || ||||| |||||||||||| Sbjct 95728 ACGACTTTACCATTAACACGAAAAAGATATCCTTTCTCGAGCGTTTTRAACCCGAAATAA 95787 Query 156501 TCAAACAGAAAATCACGGTTGT 156522 ||| || ||| || |||| || Sbjct 95788 TCATACTCAAAGTCCCGGTCGT 95809 >seq3573 Length=163174 Score = 118 bits (130), Expect = 3e-21 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||||| ||| || || ||||| || || | ||| || || || || | || Sbjct 66170 GGCGATAATACCGCAGACATCGCACACGTGCACACGGTARGCGTCCGAGTTAGCAAACAG 66229 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || || || ||| || || ||||| ||||||| |||||||||||||||||| || Sbjct 66230 ACGGTCCATGAGAAAGTTAGCTGACCCGTGAGAAATCAGACAATCACGCTCCATTTCRCC 66289 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | || |||||||| |||||||| | ||| || ||||| || || || || || Sbjct 66290 CATTCGCAGACCACCCTCGCGAGCACGACCTTCCATGGGCTGGCGTGTCAGCATAGTCAC 66349 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 |||||| || || || ||| || | ||||||||||| || ||||||||||| Sbjct 66350 GGGACCGCGCGAACGCGAGTGGATCTTGTCGTCAACCATATGCTTCAGGCGCTGGTAGAA 66409 Query 251643 TGCGGGACCGATGAAGAT 251660 || ||| || || ||||| Sbjct 66410 TGTGGGTCCAATAAAGAT 66427 >seq3395 Length=187703 Score = 118 bits (130), Expect = 3e-21 Identities = 200/281 (71%), Gaps = 18/281 (6%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||||||||||||||| | || || ||||| |||||||| | ||| ||||| Sbjct 107750 CGCCGCTGAATATAACCAGTCTCGGCAGTCTTCACAGCGGTATCAATCAAACCTTCACGA 107809 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 ||||||||||| ||||| || | ||| | || ||| |||| ||| | || | | Sbjct 107810 CCACCCATAGCGTGGAAAAAGAACTCCTGTGG-CGTTAAGCCTTTCAA-GTACGAATTTT 107867 Query 302711 CAACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTG--GTAAAGTGTGGCAGGGT 302765 | || ||||| || |||||| |||| || |||| |||| |||||||| || Sbjct 107868 CCACAAAACCCCGGCTCTCGGGACCTAAATCATC---CTTGCCGTAA--TGTGGCAGCGT 107922 Query 302766 CCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGA 302825 | | | | | || ||||| ||||||||||| || || |||||||| || | |||| Sbjct 107923 TCGATGGTTAAAACCATATGGAATACGCTTTCCTTCGACATTCTGCTGGCCAACACACGC 107982 Query 302826 AATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864 ||| ||||||||||| || ||||| | |||||||| || Sbjct 107983 AATGATCTGCGAAATGTTGATAAATGA--ACCCTTGGAACC 108021 >seq3089 Length=44755 Score = 118 bits (130), Expect = 3e-21 Identities = 200/281 (71%), Gaps = 18/281 (6%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||||||||||||||| | || || ||||| |||||||| | ||| ||||| Sbjct 2812 CGCCGCTGAATATAACCAGTCTCGGCAGTCTTCACAGCGGTATCAATCAAACCTTCACGA 2871 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 ||||||||||| ||||| || | ||| | || ||| |||| ||| | || | | Sbjct 2872 CCACCCATAGCGTGGAAAAAGAACTCCTGTGG-CGTTAAGCCTTTCAA-GTACGAATTTT 2929 Query 302711 CAACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTG--GTAAAGTGTGGCAGGGT 302765 | || ||||| || |||||| |||| || |||| |||| |||||||| || Sbjct 2930 CCACAAAACCCCGGCTCTCGGGACCTAAATCATC---CTTGCCGTAA--TGTGGCAGCGT 2984 Query 302766 CCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGA 302825 | | | | | || ||||| ||||||||||| || || |||||||| || | |||| Sbjct 2985 TCGATGGTTAAAACCATATGGAATACGCTTTCCTTCGACATTCTGCTGGCCAACACACGC 3044 Query 302826 AATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864 ||| ||||||||||| || ||||| | |||||||| || Sbjct 3045 AATGATCTGCGAAATGTTGATAAATGA--ACCCTTGGAACC 3083 >seq3639 Length=157838 Score = 104 bits (114), Expect = 7e-17 Identities = 133/180 (74%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 353957 AGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGAT-AGCTC-TTAATTGCTGT 354014 ||||||| || |||| || |||| |||||| || | | | ||| || || || | Sbjct 101751 AGAATTCGTTGTGGTGAGTAATCATAACCACACCACC--GTTGAACTCCTTGATAGCCGA 101808 Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 || ||||| ||||||||||||||||| || |||| || || || ||||| | || | Sbjct 101809 AGCAAGAGCGCCAAGCGAGTCACGGTCAAGATAATTCGTCGGCTCATCAAGCACCAGGAT 101868 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 |||||| | || |||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 101869 GTGCGGGTTCAACCACATAGCTGCGGCCAGCACAACCTTCACCTTCTGACCACCGGACAG 101928 >seq3526 Length=28024 Score = 104 bits (114), Expect = 7e-17 Identities = 133/180 (74%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 353957 AGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGAT-AGCTC-TTAATTGCTGT 354014 ||||||| || |||| || |||| |||||| || | | | ||| || || || | Sbjct 15399 AGAATTCGTTGTGGTGAGTAATCATAACCACACCACC--GTTGAACTCCTTGATAGCCGA 15456 Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 || ||||| ||||||||||||||||| || |||| || || || ||||| | || | Sbjct 15457 AGCAAGAGCGCCAAGCGAGTCACGGTCAAGATAATTCGTCGGCTCATCAAGCACCAGGAT 15516 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 |||||| | || |||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 15517 GTGCGGGTTCAACCACATAGCTGCGGCCAGCACAACCTTCACCTTCTGACCACCGGACAG 15576 >seq2450 Length=1002 Score = 84.2 bits (92), Expect = 6e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 322 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 380 Query 410554 T-GGGTAAtttttttAAT 410570 | | ||| || ||||||| Sbjct 381 TCGCGTACTTATTTTAAT 398 >seq1006 Length=2198 Score = 84.2 bits (92), Expect = 6e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 1441 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 1499 Query 410554 T-GGGTAAtttttttAAT 410570 | | ||| || ||||||| Sbjct 1500 TCGCGTACTTATTTTAAT 1517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471741886483055