Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq686 100 8e-17 >seq686 Length=3192 Score = 100 bits (110), Expect = 8e-17 Identities = 261/393 (66%), Gaps = 9/393 (2%) Strand=Plus/Minus Query 39274 CGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCA 39333 ||| |||||||| | |||| || | || | ||| |||||||| ||| |||||||| Sbjct 2470 CGGTATCCATTCCGTTTTCAAGCTGCGAAACACGCGCTCCATTGGCGCGTTGTCCCAGCA 2411 Query 39334 GTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACT 39393 ||||| ||||||||||| ||||| | ||| | || ||||||| ||| || || Sbjct 2410 ATTTCCCCGCCGGCTCATGCTCTGGCGCATCCGATAACGCCACAGCCGCTG-GCGAAATA 2352 Query 39394 GCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCAC 39453 | | |||| ||| || || ||||| ||| |||| || || || || || | Sbjct 2351 GACGACTCGCATACTGTGACCCTTGATCCGAGTGAAACAGCAGGCCTTGAGGTTTGCCTC 2292 Query 39454 GGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACA 39513 | || | ||||| |||||||| || || || | ||||||| ||||| Sbjct 2291 GTTGCTCGTAAGCCATATCCAGCGCCTTGATAACCAGATCGGCGTCCGGCTTTTCCGACA 2232 Query 39514 TGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGC 39573 |||||||||||| | || | | || || || || || || ||||| ||| Sbjct 2231 ACGCCCAGCCCACTACCCGGCGTGTGCAAAGATCCAGCACGACAGCCAGGTAATGCCA-- 2174 Query 39574 GCTTACCC---GTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCA 39630 || ||| | |||||| ||||| | || |||||||||||||| || || | | | Sbjct 2173 -TTTCCCCTGGGCCCAGATGTAGGTGATGTCGCCGCACCACACCTGGTTGGGTGCCGGAA 2115 Query 39631 CGGCGAACTGCC-TTTCAAGGTAGTTAGGGATA 39662 | |||||| || |||||| | ||| |||||| Sbjct 2114 CATCGAACTCCCGATTCAAGAT-GTTCGGGATA 2083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132592077956910