Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1101 113 6e-19 seq446 113 6e-19 seq3521 98.7 1e-14 seq3501 95.1 1e-13 seq1336 95.1 1e-13 seq692 95.1 1e-13 seq47 95.1 1e-13 >seq1101 Length=81374 Score = 113 bits (124), Expect = 6e-19 Identities = 202/295 (68%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| || ||||| || || ||||| || ||||| ||| | | || | |||| Sbjct 7276 CCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTACTT 7217 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || || | || ||| ||||| ||| ||| ||||| |||||||| || | Sbjct 7216 GCACTTCGTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCAA 7157 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 |||| || || || ||||| | || ||||| || | ||| |||| |||||| Sbjct 7156 AAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTTGTCCCAGTCCT 7097 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | ||| | ||||| | ||||||||| ||||||| ||| ||||||||||| |||| Sbjct 7096 TGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCTCGGCCTTCTTGT 7037 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||| | ||| || | | | | || || || || || || || |||||||| Sbjct 7036 ACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACGATTGGGGTT 6982 >seq446 Length=286769 Score = 113 bits (124), Expect = 6e-19 Identities = 202/295 (68%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| || ||||| || || ||||| || ||||| ||| | | || | |||| Sbjct 150706 CCGAGTGAATATTCTCAATCGCAATCTGAAACCCGTAGAAGCAGCGAGCTTCAGGTACTT 150647 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || || | || ||| ||||| ||| ||| ||||| |||||||| || | Sbjct 150646 GCACTTCRTTGCTAAAATTCATGGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCAA 150587 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 |||| || || || ||||| | || ||||| || | ||| |||| |||||| Sbjct 150586 AAAAGGCAAGCACATGCTTCACGAAATGGCGTTCATTGTCCGTGAGTTTGTCCCAGTCCT 150527 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | ||| | ||||| | ||||||||| ||||||| ||| ||||||||||| |||| Sbjct 150526 TGAGATCGTGGACCAGGTCGAGCTCCTCGGCTGTCCAGAACGAAGCCTCGGCCTTCTTGT 150467 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||| | ||| || | | | | || || || || || || || |||||||| Sbjct 150466 ACATTTGCCACACGTCGTTCTCCTGAATGGGAAAAAGCACGAAACGATTGGGGTT 150412 >seq3521 Length=28403 Score = 98.7 bits (108), Expect = 1e-14 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || || ||| || || ||||| || ||||||| |||||| || | ||| Sbjct 15475 GCCAGCTCACCCGGCAGCATGAGACGCACAGCCGTCTGGACCTCGCGGCTGGACAGCGTC 15416 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| || ||| || ||||||||| | ||||||| || | |||||| Sbjct 15415 GACTTCTTGTTGTAGCGCGACAACTTGCCGGCCTCCGATGCGATGCGCTCAAAAATGTCG 15356 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||| ||| |||||||||| |||||| | | | || |||||| || |||||||| Sbjct 15355 TTGATAAATGAGTTCATGATCGACAT-GCCACGCTTACTGATGCCTGTCTCCGGGTGCAC 15297 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 || ||||||||||||||| | | ||||||||| Sbjct 15296 TTGACGCAGCACCTTGTAGATGTAAGTCGAGTACGA 15261 >seq3501 Length=30219 Score = 95.1 bits (104), Expect = 1e-13 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 || ||||| ||| ||||||| || | || || || |||||||||||||||||||| Sbjct 7204 GTCACGTGTGTGATCCGCAACGCACCAGTGGGTCTGGGAGAGCCGTGCTTTGACAAGATG 7145 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 |||||| || || || |||||| |||| |||||||| |||||||| || || || ||| Sbjct 7144 CAGGCCGTTCTGGCGCATGCCATGATGTCCATCCCGGCTACCAAGGGCTTTGAAATCGGC 7085 >seq1336 Length=72523 Score = 95.1 bits (104), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || |||||||| || |||||||||||||| || | Sbjct 27812 GCTTGGCCAGCTCACCAGGCAACATGAGGCGCACTGCCGTCTGGATCTCGCGACTGGACA 27753 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| ||||| || | | ||| || ||||| | ||||||| |||| | Sbjct 27752 GCGTCGACTTTTTGTTGTAGCGTGACAGCTTACCAGCCTCTGAAGCGATGCGCTCGAAGA 27693 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACAT-CGACTTGTTGGAGATGCCCACGTCGGGG 1254521 || || | || |||||||||| |||||| | || ||| |||||| ||||||| Sbjct 27692 CATCATTAATGAAAGAGTTCATGATCGACATACCACGC-TTGCTAATGCCCGTGTCGGGG 27634 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||| ||||||||||| ||| | | ||||||||| Sbjct 27633 TGCACCTGACGCAGCACCTTGTAAATGTAGGTCGAGTACGA 27593 >seq692 Length=3165 Score = 95.1 bits (104), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || |||||||| || |||||||||||||| || | Sbjct 2871 GCTTGGCCAGCTCACCAGGCAACATGAGGCGCACTGCCGTCTGGATCTCGCGACTGGACA 2930 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| ||||| || | | ||| || ||||| | ||||||| |||| | Sbjct 2931 GCGTCGACTTTTTGTTGTAGCGTGACAGCTTACCAGCCTCTGAAGCGATGCGCTCGAAGA 2990 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACAT-CGACTTGTTGGAGATGCCCACGTCGGGG 1254521 || || | || |||||||||| |||||| | || ||| |||||| ||||||| Sbjct 2991 CATCATTAATGAAAGAGTTCATGATCGACATACCACGC-TTGCTAATGCCCGTGTCGGGG 3049 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||| ||||||||||| ||| | | ||||||||| Sbjct 3050 TGCACCTGACGCAGCACCTTGTAAATGTAGGTCGAGTACGA 3090 >seq47 Length=133973 Score = 95.1 bits (104), Expect = 1e-13 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 || ||||| ||| ||||||| || | || || || |||||||||||||||||||| Sbjct 64395 GTCACGTGTGTGATCCGCAACGCACCAGTGGGTCTGGGAGAGCCGTGCTTTGACAAGATG 64454 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 |||||| || || || |||||| |||| |||||||| |||||||| || || || ||| Sbjct 64455 CAGGCCGTTCTGGCGCATGCCATGATGTCCATCCCGGCTACCAAGGGCTTTGAAATCGGC 64514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106809710297755