Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1336 138 2e-26 seq692 138 2e-26 seq1101 136 6e-26 seq3521 131 3e-24 seq446 114 2e-19 >seq1336 Length=72523 Score = 138 bits (152), Expect = 2e-26 Identities = 184/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| ||||| || |||||||| || ||||||||| ||||||| || || ||| | Sbjct 27848 ACTTGGTCACGGCTTTCGTACCCTCCGACACGGCGTGCTTGGCCAGCTCACCAGGCAACA 27789 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 | |||||||| || |||||||||||||| || | ||| ||||| ||| | Sbjct 27788 TGAGGCGCACTGCCGTCTGGATCTCGCGACTGGACAGCGTCGACTTTTTGTTGTAGCGTG 27729 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 ||| || ||||| | ||||||| |||| | || || | || |||||||||| Sbjct 27728 ACAGCTTACCAGCCTCTGAAGCGATGCGCTCGAAGACATCATTAATGAAAGAGTTCATGA 27669 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 ||||||| ||| |||||| ||||||||||||||| ||||||||||||| Sbjct 27668 TCGACATACCACGCTTGCTAATGCCCGTGTCGGGGTGCACCTGACGCAGCACCTTGTAAA 27609 Query 1485713 CAAAGGACGAGTACGA 1485728 ||| ||||||||| Sbjct 27608 TGTAGGTCGAGTACGA 27593 >seq692 Length=3165 Score = 138 bits (152), Expect = 2e-26 Identities = 184/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| ||||| || |||||||| || ||||||||| ||||||| || || ||| | Sbjct 2835 ACTTGGTCACGGCTTTCGTACCCTCCGACACGGCGTGCTTGGCCAGCTCACCAGGCAACA 2894 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 | |||||||| || |||||||||||||| || | ||| ||||| ||| | Sbjct 2895 TGAGGCGCACTGCCGTCTGGATCTCGCGACTGGACAGCGTCGACTTTTTGTTGTAGCGTG 2954 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 ||| || ||||| | ||||||| |||| | || || | || |||||||||| Sbjct 2955 ACAGCTTACCAGCCTCTGAAGCGATGCGCTCGAAGACATCATTAATGAAAGAGTTCATGA 3014 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 ||||||| ||| |||||| ||||||||||||||| ||||||||||||| Sbjct 3015 TCGACATACCACGCTTGCTAATGCCCGTGTCGGGGTGCACCTGACGCAGCACCTTGTAAA 3074 Query 1485713 CAAAGGACGAGTACGA 1485728 ||| ||||||||| Sbjct 3075 TGTAGGTCGAGTACGA 3090 >seq1101 Length=81374 Score = 136 bits (150), Expect = 6e-26 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || |||||||||| |||||||||||| ||| |||||||||||||||||||| | ||| Sbjct 7877 ACACCCGCCTTGGAATACTCGCCCACACGCTTTTCGAAAAAGTTGGTCTTGCCTTGTAGC 7818 Query 793953 GAGATCAACTCCATCCACGGGAACGGGT--TGGCCGTCAGGTAGTGCTTCTC-GCACCCG 794009 || |||| |||||||| ||| |||| | | ||| | || ||| | ||||| Sbjct 7817 GAAATCATATCCATCCAGTCGAATGGGTTCTTGGCGT--GATAAATCTTGGCAACACCC- 7761 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 || || || | ||||| || ||||| ||||||||||| |||||||| || | |||| Sbjct 7760 AGTGAGTACAGTAAACGGTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTC 7701 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGAT 794119 ||||| |||||| | || || || || || | |||||||| | ||| || Sbjct 7700 ATGCCAATGAGCTCGACAGGGAGTGAGTCACGCACAAACTCGTGCTCAAT 7651 Score = 114 bits (126), Expect = 2e-19 Identities = 169/236 (72%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 796185 GGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGAT 796244 ||| ||||| || ||| ||||| |||||||| || |||||||| || || ||||| | Sbjct 7194 GGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCAC 7135 Query 796245 AAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTG---TCGGCGCCGAGGTC 796301 || || || || | ||| |||| | |||||| || || ||| | | ||||| Sbjct 7134 GAAATGGCGTTCATTGTCCGTGAGTTTGTCCCAGT---CCTTGAGATCGTGGACCAGGTC 7078 Query 796302 GACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTG 796361 || ||||||||| ||||| || || ||||||||||| |||||||| | ||| | ||| | Sbjct 7077 GAGCTCCTCGGCTGTCCAGAACGAAGCCTCGGCCTTCTTGTACATTTGCCACA--CGTCG 7020 Query 796362 GTAGC--GGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | | | ||||| || || || || ||||||||||| || || | |||||| Sbjct 7019 TTCTCCTGAATGGGAAAAAGCACGAAACGATTGGGGTTTACGACGAGGAACGGCTC 6964 >seq3521 Length=28403 Score = 131 bits (144), Expect = 3e-24 Identities = 187/263 (71%), Gaps = 8/263 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || ||||| ||||||||| | ||||| || || ||| Sbjct 15519 TGAACTTGGTCACAGCCTTTGTGCCTTCTGACACGGCGTGCTTTGCCAGCTCACCCGGCA 15460 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||| ||||||| || | ||| |||||| || Sbjct 15459 GCATGAGACGCACAGCCGTCTGGACCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAGC 15400 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || ||||||||| | ||||||| || | |||||||||| ||| ||||||| Sbjct 15399 GCGACAACTTGCCGGCCTCCGATGCGATGCGCTCAAAAATGTCGTTGATAAATGAGTTCA 15340 Query 1485650 TGATCGACAT----CGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||||| || || | |||||| || |||||||| || |||||| Sbjct 15339 TGATCGACATGCCACGCTTACT----GATGCCTGTCTCCGGGTGCACTTGACGCAGCACC 15284 Query 1485706 TTGTAAACAAAGGACGAGTACGA 1485728 ||||| | | | ||||||||| Sbjct 15283 TTGTAGATGTAAGTCGAGTACGA 15261 >seq446 Length=286769 Score = 114 bits (126), Expect = 2e-19 Identities = 169/236 (72%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 796185 GGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGAT 796244 ||| ||||| || ||| ||||| |||||||| || |||||||| || || ||||| | Sbjct 150624 GGCGAGGTTTTCGTTCACAATGCCATCGCTGGCTGCAAAAAAGGCAAGCACATGCTTCAC 150565 Query 796245 AAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTG---TCGGCGCCGAGGTC 796301 || || || || | ||| |||| | |||||| || || ||| | | ||||| Sbjct 150564 GAAATGGCGTTCATTGTCCGTGAGTTTGTCCCAGT---CCTTGAGATCGTGGACCAGGTC 150508 Query 796302 GACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTG 796361 || ||||||||| ||||| || || ||||||||||| |||||||| | ||| | ||| | Sbjct 150507 GAGCTCCTCGGCTGTCCAGAACGAAGCCTCGGCCTTCTTGTACATTTGCCACA--CGTCG 150450 Query 796362 GTAGC--GGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | | | ||||| || || || || ||||||||||| || || | |||||| Sbjct 150449 TTCTCCTGAATGGGAAAAAGCACGAAACGATTGGGGTTTACGACGAGGAACGGCTC 150394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915819306137585