Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3385 105 4e-18 >seq3385 Length=38424 Score = 105 bits (116), Expect = 4e-18 Identities = 144/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| ||||| || |||||||| ||| || |||| ||||| ||||| || || |||| Sbjct 14324 CCTTTTGAATATTGTAGTCCGAAAGGGCACGTCCATCTTCCAGCTGCTTGCCAGCAAAGA 14383 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| |||||||| || |||| | || |||||||| | ||||| || || || || Sbjct 14384 TCAGACGTTGCTGCTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTAAC--AT- 14440 Query 34908 CTATCGATTCATT-GGCC---TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| | | || | || || || | || |||||||| || || | |||||| Sbjct 14441 -TTTCGATGCTGTCGGACGATTCCACCTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTT 14499 Query 34964 ACAAAGATCTGCATGAT 34980 ||||| ||||||||||| Sbjct 14500 ACAAAAATCTGCATGAT 14516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325676862935285