Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq1576 518 1e-142 >seq1576 Length=1476 Score = 518 bits (574), Expect = 1e-142 Identities = 492/626 (79%), Gaps = 2/626 (0%) Strand=Plus/Minus Query 39839 CCAGCCAAGGACGTCTGGGGATGGATTCAAAGCGAGATCCTTGCCGATACCGGCAGCATC 39898 ||||||| || || |||| |||| | |||| ||||||||||||||| || || | ||| Sbjct 625 CCAGCCACAGATGTTTGGGAATGGCTACAAACCGAGATCCTTGCCGACACAGGGACCATT 566 Query 39899 CACAACGAAGACCATGCCCATTTGATCGATGCTGACATCTGCATCATGTGGGCCTCATCT 39958 |||||||||||||||||||| | | ||||| |||||| || |||||||||| || || Sbjct 565 CACAACGAAGACCATGCCCACCTACTGGATGCGGACATCCGCGTCATGTGGGCGTCGTCG 506 Query 39959 GCCTTCACGAAGCAAGGTCGCACAGTGCTGGGCCAAGCCGAACAGGTTGCGTTCCGTGCC 40018 |||| | ||||| ||| | ||||| |||||||| ||||| || || | |||||| || Sbjct 505 AGCTTCGCCAAGCATGGTAGGACAGTCCTGGGCCAGGCCGAGCAAGTGGGGTTCCGCGCT 446 Query 40019 GGTGGTTGGCAGAAGGCCCGGATGGAGCAGCAGATGCGTGACTGGTTCGGCTGCGTACCG 40078 ||||| |||||||| ||||||||||| |||||||||||||| ||||||||| ||| ||| Sbjct 445 GGTGGCTGGCAGAAAGCCCGGATGGAACAGCAGATGCGTGATTGGTTCGGCGACGTGCCG 386 Query 40079 AGCTACATCATCACCCTGGCTGCCGATTACTGCTCACAGTGCAGCGATGCGGACTTCTGT 40138 || |||||||||||| ||||| || |||||| | ||||||||||| | ||||||||| Sbjct 385 GCCTTCATCATCACCCTAGCTGCGGACTACTGCGCTCAGTGCAGCGACACCGACTTCTGT 326 Query 40139 GCACTGGTCGAGCATGAGCTCTACCACATCGCCCAGGCAGTCGATCAGTACGGCGCGCCC 40198 || ||||| |||||||||||||| ||||||||||| || | ||| ||||||| ||| Sbjct 325 GCCCTGGTTGAGCATGAGCTCTATCACATCGCCCATGCCATGGATAAGTACGGTCAGCCA 266 Query 40199 AAGTTCACGCAAGACGGATTACCAAAGCTTGAGATGCGCGGCCATGACGTCGAAGAGTTC 40258 || || | || || ||| ||||||||||||||| || || ||||| |||||| Sbjct 265 GCATTTACCAAGGATGGCGCACCCAAGCTTGAGATGCGCTCACACGATGTCGAGGAGTTC 206 Query 40259 GTCGGTGTGGTCAGGCGCTATGGGGCAAGCCCAGACGTTCAGCTACTGGTCGACGCTGCA 40318 || || |||||| | ||||| || |||||||| |||||||| |||| || |||||| Sbjct 205 GTTGGCGTGGTCCGCCGCTACGGTGCAAGCCCTGACGTTCAAGCGTTGGTGGATGCTGCA 146 Query 40319 AACAAACCTGCCGAAGTCGGCAAACTCAATATTTCAAGGGCTTGCGGAACCTGTCTTCTC 40378 |||| |||||||| || || ||| | || || || ||||| |||||||||||||| ||| Sbjct 145 AACAGTCCTGCCGAGGTGGGGAAATTGAACATATCGAGGGCCTGCGGAACCTGTCTGCTC 86 Query 40379 AAGCTGGCCTGAGGATAGACAG-CAATAGACGGAACCCTACCCTATGGCAGCCCTGAGCA 40437 | |||||||| ||||| | |||||||| ||||||||||||||||||| || Sbjct 85 AGATTGGCCTGACCCCTGACAGACCTAAGACGGAA-TTTACCCTATGGCAGCCCTGAACA 27 Query 40438 GCGAGGTGAAGGCCTTCATCGTTCAG 40463 |||||||| | |||||| |||||| Sbjct 26 ATGAGGTGAAAGGCTTCATGGTTCAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163358610996360