Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3828 109 5e-19 seq3385 93.3 4e-14 >seq3828 Length=141882 Score = 109 bits (120), Expect = 5e-19 Identities = 363/559 (65%), Gaps = 13/559 (2%) Strand=Plus/Plus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| |||||||| |||||||| || ||| | ||| || || ||||| || | Sbjct 93999 GCGCATGTAGTACATACCCGTCTTTAGCCCCTTCTTCCAAGCATAAAAGTGCATGGATG- 94057 Query 148013 CATGAGCGT---GTACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 |||| | | |||||||| |||| | | |||| |||||| |||||| | Sbjct 94058 --TGAGTTTACTGATCGTCGGGT-CGGCGATGTGAATGTTAAGCGACTGACTCTGGCAGA 94114 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCC 148127 | | || ||||||||||| | || || | | | ||| | ||| || ||||| | Sbjct 94115 TATAAGCACCACGGTCAGCCGACAGATCTAACACG-GATTTCTGCTTGATTTCCCACACT 94173 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||| | |||| ||| || ||||||| | | ||||| || || || Sbjct 94174 GTCTTGTACTTCTCYTTGACATGGTCCGGAATGCTTTTCACCTTTTGCACAGARCCATGG 94233 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | | ||||| || || | ||| ||| | | || |||||||| || | Sbjct 94234 TCGTTCAGTATCTGGTTACGGACCTCGGGCGTCCAGATACCCAGATCGATCAGCTCTTTC 94293 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 ||||| |||| ||||| | | ||||| || || ||||| || || |||| ||| Sbjct 94294 ATCAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGATTGTACATGTTC 94353 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 ||| | || || | ||||||||||| || | ||||| || |||| || || ||| Sbjct 94354 GACGTGTATGGCTCGATGGACTCGTTGTTACCAAGGATCTGGGCAGTCGAAGCAGTAGGC 94413 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCC 148427 ||| || || |||| |||||||| | |||| | || | | || |||||||| Sbjct 94414 ATGGGAGCCACTAGCAAAGAGTTGCGGATACCGTGCTTAATCACATTCTTTTTCAGAGCG 94473 Query 148428 GCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 |||||||||| || | ||||| | || ||||||||| |||| | || || Sbjct 94474 ACCCAGTCCCAAAGACCAGAGGACGGAATGACACCCCACATGTCAAACTGGAAGATACCC 94533 Query 148485 CGGCTAGCGGGGCTGCCCT 148503 |||||| ||| ||||| Sbjct 94534 TTGCTAGCCGGGGAGCCCT 94552 >seq3385 Length=38424 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || || || ||||| || || || |||||||||||| Sbjct 14359 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGCTCAGGCGGAATGCCTTCCTTG 14418 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | | || | |||||| | ||||| || | || | | Sbjct 14419 TCCTGGATTTTCTGCTTAACATTTTCGATGCTGTCGGACGATTCCACCTCCAAAGTAATG 14478 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| |||| ||| ||||| |||||||||||| Sbjct 14479 GTCTTGCCTGTCAAAGTCTTTACAAAAATCTGCATG 14514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483396538318600