Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1113 167 3e-36 >seq1113 Length=254142 Score = 167 bits (184), Expect = 3e-36 Identities = 464/697 (67%), Gaps = 21/697 (3%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| ||||| || || |||| |||||||| || | | || | || || || Sbjct 12979 AGTGGCTCTACGTGATTCAGATAGATATGCGCGTCACCGATGACATGGATGAACTCGCCA 13038 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 | || || || ||| || || |||| || |||| || |||||||| || || Sbjct 13039 GCTTTCAGTCCTACCACTTGCGCGACCAAACGCGTCAGCAACGCATAGCTGGCAATATTA 13098 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || || || || || |||| | ||||||| ||||||||| || || | Sbjct 13099 AACGGCACGCCTAGTCCAATATCGGCCGAGCGTTGGTACATCTGGCACGACAGTTCATCA 13158 Query 147100 TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 || |||||||||||||| || | ||||||||||| |||| ||||| | ||| || Sbjct 13159 TCCGCCACGTAAAACTGACAAAACATGTGGCACGGAGGCAATGCCATTTCATTCAGATCA 13218 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCG 147219 || || ||||| || || | ||| | || | | | ||| ||| | | || | | Sbjct 13219 GCCGGATTCCAAGCTGACAGCACAATTCGGCGGTCATTGGGATTCGTGCGGAGCTTATGG 13278 Query 147220 ATAACCCACCTC----AGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCA 147274 || |||||| |||||||||||||| ||||| | ||| | | | ||| ||| Sbjct 13279 AT----CACCTCGGCAAGCTGGTCCACGCCTTGGCCGCTATAG-TCGGCGTGCATATCCG 13333 Query 147275 CGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCT 147334 |||| |||| ||||| || | ||| || || || || || || || || || || || Sbjct 13334 TGTACTTGGCACCAAAATGGCGCCATTGAAAACCATAAACCGGTCCAAGATCTCCCACCT 13393 Query 147335 TTCTGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATG 147393 | ||| | || || | | | | ||||| | ||||| | | ||||||| ||| Sbjct 13394 CGC-GTGACTGCAGTCCTCTACTGTCCAAGTACTCGCGCGACCCATTGCCGTCCCAAATG 13452 Query 147394 CCCAC-TCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAG 147452 || | | || || || ||| | | | |||| || | || ||||| |||| Sbjct 13453 TGAACATTCTTTTGCTGA-AGCGTGTGCGCATTCGTGTCACCACTAATAAACCACAGCAA 13511 Query 147453 CTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGG---GAACTGGTC 147509 |||||| || || | |||||| ||| |||| || ||||||| || || | || Sbjct 13512 CTCCTCGGCCACACCACGCCAAAACACCTTCTTCGTCGTCAGCAACGGAAAGACATTCTC 13571 Query 147510 CCTCAG-CGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGT 147568 ||||| |||| | ||| ||| ||||||||||||||||||| || || || || | || Sbjct 13572 TCTCAGACGAA-ATCTCATCTGCGCCCCAAACACAGACAGCGTTCCGGTACCTGTTCGGT 13630 Query 147569 CCTCCCTGC-GCGTCCCGTTCTCCAAAATCTCCCTGA 147604 |||| || ||| || | || |||||||| || || Sbjct 13631 -CTCCGCGCTTCGTTCCTTGCTTCAAAATCTTCCGGA 13666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583458716196000